Detail information of GWHGAAZE018653


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI25076.37.0945E-170unnamed protein product [Vitis vinifera]
Swissprottr|O48651|ERG1_PANGI1E-159Squalene monooxygenase
trEMBLtr|F6HBJ9|F6HBJ9_VITVI1E-169Putative uncharacterized protein {ECO:0000313|EMBL:CCB49598.1}
TAIR10AT4G37760.14E-131squalene epoxidase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2232127622341491-
GWHAAZE00000005mRNA2232127622341491-
GWHAAZE00000005exon2232127622321407-
GWHAAZE00000005exon2232152022321798-
GWHAAZE00000005exon2232188922322164-
GWHAAZE00000005exon2232264122322853-
GWHAAZE00000005exon2232295722323125-
GWHAAZE00000005exon2232355522323729-
GWHAAZE00000005exon2232391922324030-
GWHAAZE00000005exon2232655322326584-
GWHAAZE00000005exon2232806122328166-
GWHAAZE00000005exon2232838522328522-
GWHAAZE00000005exon2232977522330050-
GWHAAZE00000005exon2233042622330638-
GWHAAZE00000005exon2233076222330930-
GWHAAZE00000005exon2233169522331869-
GWHAAZE00000005exon2233205622332167-
GWHAAZE00000005exon2233620322336286-
GWHAAZE00000005exon2233638422336662-
GWHAAZE00000005exon2233784522338120-
GWHAAZE00000005exon2233876322338975-
GWHAAZE00000005exon2233910422339272-
GWHAAZE00000005exon2234003022340204-
GWHAAZE00000005exon2234039522340506-
GWHAAZE00000005exon2234145022341491-
GWHAAZE00000005CDS2234145022341491-
GWHAAZE00000005CDS2234039522340506-
GWHAAZE00000005CDS2234003022340204-
GWHAAZE00000005CDS2233910422339272-
GWHAAZE00000005CDS2233876322338975-
GWHAAZE00000005CDS2233784522338120-
GWHAAZE00000005CDS2233638422336662-
GWHAAZE00000005CDS2233620322336286-
GWHAAZE00000005CDS2233205622332167-
GWHAAZE00000005CDS2233169522331869-
GWHAAZE00000005CDS2233076222330930-
GWHAAZE00000005CDS2233042622330638-
GWHAAZE00000005CDS2232977522330050-
GWHAAZE00000005CDS2232838522328522-
GWHAAZE00000005CDS2232806122328166-
GWHAAZE00000005CDS2232655322326584-
GWHAAZE00000005CDS2232391922324030-
GWHAAZE00000005CDS2232355522323729-
GWHAAZE00000005CDS2232295722323125-
GWHAAZE00000005CDS2232264122322853-
GWHAAZE00000005CDS2232188922322164-
GWHAAZE00000005CDS2232152022321798-
GWHAAZE00000005CDS2232130322321407-
GWHAAZE00000005three_prime_UTR2232127622321302-
Transcript Sequence

Network for GWHGAAZE018653

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08491.11SE1454092.00E-75
PF08491.11SE5818105.50E-69
PF08491.11SE98812582.00E-76
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00511SQLE, ERG1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Steroid biosynthesismap00100
Sesquiterpenoid and triterpenoid biosynthesismap00909

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016021cellular_componentintegral component of membrane
GO:0004506molecular_functionsqualene monooxygenase activity
GO:0050660molecular_functionflavin adenine dinucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.280
SRR3591706second leaf2.921
SRR3591707mature leaf4.521
SRR3591708Shoot apex1.480
SRR3591709Stem1.537
SRR3591710White floral bud1.528
SRR3591711White flower1.170
SRR3591712Green floral bud39.189
SRR3591713Yellow flower1.325
SRP173429 SRR8316895Juvenile bud stage 316.936
SRR8316896Juvenile bud stage 576.917
SRR8316897Juvenile bud stage 153.000
SRR8316894Third green stage 168.589
SRR8316900Third green stage 1.173
SRR8316901Third green stage 113.335
SRR8316898Complete white stage 0.415
SRR8316899Complete white stage 1.633
SRR8316903Complete white stage 0.570
SRR8316902Silver flowering stage0.268
SRR8316904Silver flowering stage0.716
SRR8316905Silver flowering stage0.332
SRR8316906Gold flowering stage 1.402
SRR8316907Gold flowering stage 1.156
SRR8316908Gold flowering stage 1.124
SRP132670SRR6706286Control75.605
SRR6706287Light intensity 50%76.040
SRR6706288Light intensity 20%3.533
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.057
CNS0095593Slightly white alabastrum(diploid) 220.428
CNS0095594Slightly white alabastrum(diploid) 3206.174
CNS0095595Whole white alabastrum(diploid) 20.945
CNS0095596Whole white alabastrum(diploid) 30.908
CNS0095597Whole white alabastrum(diploid) 41.159
CNS0095598Silvery flower (diploied) 12.011
CNS0095599Silvery flower (diploied) 21.373
CNS0095600Silvery flower (diploied) 31.668
CNS0095601Golden flower (diploid) 12.353
CNS0095602Golden flower (diploid) 22.036
CNS0095603Golden flower (diploid) 31.794
CNS0095604Slightly white alabastrum(tetraploid) 125.834
CNS0095605Slightly white alabastrum(tetraploid) 239.701
CNS0095606Slightly white alabastrum(tetraploid) 31.109
CNS0095607Whole white alabastrum(tetraploid) 10.909
CNS0095608Whole white alabastrum(tetraploid) 20.671
CNS0095609Whole white alabastrum(tetraploid) 32.206
CNS0095610Silvery flower (tetraploid) 11.330
CNS0095611Silvery flower (tetraploid) 21.376
CNS0095612Silvery flower (tetraploid) 31.121
CNS0095613Golden flower (tetraploid) 11.402
CNS0095614Golden flower (tetraploid) 21.378
CNS0095615Golden flower (tetraploid) 31.126
CRA001975CRR073297Stem 1457.128
CRR073298Stem 2644.580
CRR073299Stem 3822.098
CRR073300Leaf 11.037
CRR073301Leaf 21.157
CRR073302Leaf 314.224
CRR073303Juvenile bud 10.566
CRR073304Juvenile bud 20.390
CRR073305Juvenile bud 30.745
CRR073306Third green 10.309
CRR073307Third green 20.290
CRR073308Third green 30.187
CRR073309Second white 10.334
CRR073310Second white 20.474
CRR073311Second white 30.357
CRR073312Silver flowering 10.246
CRR073313Silver flowering 20.421
CRR073314Silver flowering 30.109
CRR073315Gold flowering 11.185
CRR073316Gold flowering 21.327
CRR073317Gold flowering 30.542
CRR073318Tawny withering 10.478
CRR073319Tawny withering 20.835
CRR073320Tawny withering 30.671