Gene detail

Detail information of GWHGAAZE018656

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009764687.1	0	PREDICTED: proline iminopeptidase isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|P93732\|PIP_ARATH	0	Proline iminopeptidase
trEMBL	tr\|B9S7S3\|B9S7S3_RICCO	0	Proline iminopeptidase {ECO:0000256\|RuleBase:RU003421}
TAIR10	AT2G14260.1	5E-154	proline iminopeptidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22366017	22370059	-
GWHAAZE00000005	mRNA	22366017	22370059	-
GWHAAZE00000005	exon	22366017	22366115	-
GWHAAZE00000005	exon	22366808	22366882	-
GWHAAZE00000005	exon	22367138	22367251	-
GWHAAZE00000005	exon	22367774	22367875	-
GWHAAZE00000005	exon	22368227	22368324	-
GWHAAZE00000005	exon	22368601	22368694	-
GWHAAZE00000005	exon	22368809	22368848	-
GWHAAZE00000005	exon	22368944	22369053	-
GWHAAZE00000005	exon	22369146	22369244	-
GWHAAZE00000005	exon	22369814	22370059	-
GWHAAZE00000005	CDS	22369814	22370059	-
GWHAAZE00000005	CDS	22369146	22369244	-
GWHAAZE00000005	CDS	22368944	22369053	-
GWHAAZE00000005	CDS	22368809	22368848	-
GWHAAZE00000005	CDS	22368601	22368694	-
GWHAAZE00000005	CDS	22368227	22368324	-
GWHAAZE00000005	CDS	22367774	22367875	-
GWHAAZE00000005	CDS	22367138	22367251	-
GWHAAZE00000005	CDS	22366808	22366882	-
GWHAAZE00000005	CDS	22366017	22366115	-

Transcript Sequence
>GWHTAAZE018678 ATGGTTTTGCTAAGTTTGCAGGGGTTTTATTTGACTGCAGGAAGAAAGAATTTAGTATCTTGTGTTCAAAATATTGGTTATAAGACTGAGCAGGAGCTGAGTGCCGCATCAATGGATTTGAAGAAAGAATTTTCAGAATTAAATAGGAATCTTTATCCACAAATAGAGCCATATAGCACCGGTTTTCTGAAGGTTTCGGATCTTCACTCGATCTACTGGGAGCAATCAGGGAATCCAAATGGGCATCCAGTTGTTTTTCTCCACGGGGGACCGGGAGGTGGAACATCACCAAGTAACCGCAGATTCTTTGATCCCGAGTTCTATCGGATCATTCTCTTTGATCAGAGAGGTGCTGGTAAGAGTACTCCCCACGCTTGCTTGCTGGAAAACACGACGTGGGATCTCATCAAAGACATTGAAAACTCAGGGAACACCTGGAAATTCCGGAATGGCAGCACATTAGCTCTTGCATACAGCCAATCACATCCCGACAAGGTCACTGGAATTGTCCTTCGAGGGATCTTTATGCTGAGGAAGAAAGAGATTGATTGGTTTTATGAGGGTGGGGCTGCTGCTATATACCCTGACGCTTGGGAGCAATTTAGAGATCTTATTCCTGAACATGAAAGGGGATGTTTTGTTGATGCTTACCACAAGAGATTGAATTCCGATGACTTGGAAACACAATATGCAGCTGCTAGGGCATGGACCAAATGGGAAATGATGACCGCTCATCTTCTTCCAAATGAAGAGAACATAAAGAGGGGGGATGATGATGCATTCTCTTTGGCATTTGCAAGGATTGAGAACCATTACTTTGTGAACAAGGGGTTTTTCCCTTCAGATTCCTTCCTATTAGATAACATTGAAAAGATAAGGCATATTAGCACTACAATTGTACAGGGAAGATATGACATGTGCTGCCCCATGATGTCAGCTTGGGATCTGCATAAAGCTTGGCCAGAGGCAGAGTTTAAGGTTGTGGCAGATGCTGGACATTCTGCCAATGAGCCAGGAATAGCAGCCGAACTTGTAGCTGCGAATGAGAAGCTAAAGAGCATTATCAAGAAAAATTGA

Network for GWHGAAZE018656

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00561.21	Abhydrolase_1	83	140	5.40E-07
PF00561.21	Abhydrolase_1	151	336	1.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01259	pip	Metabolic pathways	map01100
K01259	pip	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0005737	cellular_component	cytoplasm
GO:0008233	molecular_function	peptidase activity
GO:0004177	molecular_function	aminopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	88.891
	SRR3591706	second leaf	42.797
	SRR3591707	mature leaf	41.830
	SRR3591708	Shoot apex	58.300
	SRR3591709	Stem	61.035
	SRR3591710	White floral bud	46.744
	SRR3591711	White flower	57.971
	SRR3591712	Green floral bud	52.096
	SRR3591713	Yellow flower	44.793
SRP173429	SRR8316895	Juvenile bud stage	31.051
	SRR8316896	Juvenile bud stage	44.670
	SRR8316897	Juvenile bud stage	24.492
	SRR8316894	Third green stage	23.242
	SRR8316900	Third green stage	84.754
	SRR8316901	Third green stage	79.067
	SRR8316898	Complete white stage	38.013
	SRR8316899	Complete white stage	102.213
	SRR8316903	Complete white stage	52.892
	SRR8316902	Silver flowering stage	39.211
	SRR8316904	Silver flowering stage	43.038
	SRR8316905	Silver flowering stage	24.340
	SRR8316906	Gold flowering stage	79.348
	SRR8316907	Gold flowering stage	78.034
	SRR8316908	Gold flowering stage	90.276
SRP132670	SRR6706286	Control	76.612
	SRR6706287	Light intensity 50%	71.671
	SRR6706288	Light intensity 20%	78.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.384
	CNS0095593	Slightly white alabastrum(diploid) 2	32.079
	CNS0095594	Slightly white alabastrum(diploid) 3	28.780
	CNS0095595	Whole white alabastrum(diploid) 2	38.555
	CNS0095596	Whole white alabastrum(diploid) 3	36.896
	CNS0095597	Whole white alabastrum(diploid) 4	34.120
	CNS0095598	Silvery flower (diploied) 1	53.811
	CNS0095599	Silvery flower (diploied) 2	53.894
	CNS0095600	Silvery flower (diploied) 3	92.596
	CNS0095601	Golden flower (diploid) 1	44.485
	CNS0095602	Golden flower (diploid) 2	77.540
	CNS0095603	Golden flower (diploid) 3	77.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.238
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.422
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.888
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.914
	CNS0095610	Silvery flower (tetraploid) 1	111.146
	CNS0095611	Silvery flower (tetraploid) 2	119.083
	CNS0095612	Silvery flower (tetraploid) 3	89.517
	CNS0095613	Golden flower (tetraploid) 1	82.975
	CNS0095614	Golden flower (tetraploid) 2	100.920
	CNS0095615	Golden flower (tetraploid) 3	73.069
CRA001975	CRR073297	Stem 1	40.119
	CRR073298	Stem 2	38.292
	CRR073299	Stem 3	39.567
	CRR073300	Leaf 1	50.086
	CRR073301	Leaf 2	51.520
	CRR073302	Leaf 3	54.981
	CRR073303	Juvenile bud 1	71.968
	CRR073304	Juvenile bud 2	61.489
	CRR073305	Juvenile bud 3	58.486
	CRR073306	Third green 1	29.886
	CRR073307	Third green 2	23.034
	CRR073308	Third green 3	24.701
	CRR073309	Second white 1	47.562
	CRR073310	Second white 2	33.178
	CRR073311	Second white 3	32.047
	CRR073312	Silver flowering 1	30.696
	CRR073313	Silver flowering 2	32.737
	CRR073314	Silver flowering 3	32.271
	CRR073315	Gold flowering 1	46.212
	CRR073316	Gold flowering 2	44.939
	CRR073317	Gold flowering 3	36.304
	CRR073318	Tawny withering 1	47.881
	CRR073319	Tawny withering 2	59.064
	CRR073320	Tawny withering 3	43.466