Gene detail

Detail information of GWHGAAZE018658

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002522037.1	0	malate dehydrogenase, putative [Ricinus communis]
Swissprot	tr\|P19446\|MDHG_CITLA	0	Malate dehydrogenase, glyoxysomal (Precursor)
trEMBL	tr\|B9S7S1\|B9S7S1_RICCO	0	Malate dehydrogenase {ECO:0000256\|RuleBase:RU003405}
TAIR10	AT2G22780.1	4E-162	peroxisomal NAD-malate dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22397232	22400446	+
GWHAAZE00000005	mRNA	22397232	22400446	+
GWHAAZE00000005	exon	22397232	22397303	+
GWHAAZE00000005	exon	22397410	22397625	+
GWHAAZE00000005	exon	22398504	22398818	+
GWHAAZE00000005	exon	22398913	22399002	+
GWHAAZE00000005	exon	22399124	22399207	+
GWHAAZE00000005	exon	22399427	22399462	+
GWHAAZE00000005	exon	22399588	22399677	+
GWHAAZE00000005	exon	22399764	22399858	+
GWHAAZE00000005	exon	22400374	22400446	+
GWHAAZE00000005	CDS	22397232	22397303	+
GWHAAZE00000005	CDS	22397410	22397625	+
GWHAAZE00000005	CDS	22398504	22398818	+
GWHAAZE00000005	CDS	22398913	22399002	+
GWHAAZE00000005	CDS	22399124	22399207	+
GWHAAZE00000005	CDS	22399427	22399462	+
GWHAAZE00000005	CDS	22399588	22399677	+
GWHAAZE00000005	CDS	22399764	22399858	+
GWHAAZE00000005	CDS	22400374	22400446	+

Transcript Sequence
>GWHTAAZE018680 ATGCATTCAACTACAGAAGCCAACCACCGTATTGCAAGAATCTCAGCTCATCTCCACCCTTCCAATCTCCAGATGGAGGGGAGTTCAATTTTGGAGAAGGCTAATTGCAGAGCAAAAGGTGGGGCCCCAGGATTCAAAGTTGCAATATTGGGGGCTGCTGGAGGAATTGGGCAGCCACTTGCTATGTTAATGAAGATGAATCCACTTGTTTCAGTTCTTCATCTGTATGATGTTGTTAATTCCCCTGGTGTTACTGCTGATATTGGTCATATGGACACTGGCGCTGTGGTGAGAGGGTTTCTGGGGCAACCACAGCTTGAGAGTGCTCTTGTGGGGATGGACCTTGTAATCATACCCGCCGGTATTCCAAGGAAGCCTGGGATGACAAGAGATGACCTTTTCAAGATTAATGCCGGAATTGTGAAGACCCTTTGTGAGGGAATCGCAAAGTGCTGTCCGAATGCACTTGTCAACTTGATCAGTAACCCAGTGAATTCTACAGTTCCGATAGCAGCAGAAGTTTTCAAGAAAGCAGGCACTTACGATCCAAAGAAGCTTTTGGGCGTTACAATGCTTGATGTAGTTAGAGCTAACACCTTTGTGGCAGAAGTTCTGGGACTTGATCCTCGGGACGTGGATGTTCCAGTTGTTGGAGGTCATGCAGGGGTGACAATTTTGCCGCTTCTTTCACAGGTTAAGCCTCCTTGCTCCTTCACGCCAGAAGAAACTGAATACCTCACAAAACGCATTCAAGATGGTGGAACTGAAGTTGTTCAGGCAAAAGCTGGGGCCGGCTCTGCAACCCTATCCATGGCATACGCTGCCGTTAAATTTGCAGATGCTTGCCTTCGTGGCTTGAGAGGAGACGCTGGAGTTGTGGAGTGTTCTTTTGTATCTTCTCAGGTGACAGAACTCCCTTTCTTTGCATCAAAGGTACGACTAGGCCGTACCGGTGCTGAAGAGGTCTACCAACTTGGACCCCTCAACGAGTACGAGAGGGTTGGATTGGAGAAAGCAAAGAAAGAATTAGCAGAAAGCATTCAGAAGGGAGTTTCATTTATCAGGAAATGA

Network for GWHGAAZE018658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00056.24	Ldh_1_N	46	188	9.60E-46
PF02866.19	Ldh_1_C	190	353	1.30E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00026	MDH2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006108	biological_process	malate metabolic process
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0003824	molecular_function	catalytic activity
GO:0016615	molecular_function	malate dehydrogenase activity
GO:0030060	molecular_function	L-malate dehydrogenase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	168.342
	SRR3591706	second leaf	686.242
	SRR3591707	mature leaf	1028.551
	SRR3591708	Shoot apex	215.969
	SRR3591709	Stem	203.022
	SRR3591710	White floral bud	63.471
	SRR3591711	White flower	87.580
	SRR3591712	Green floral bud	48.357
	SRR3591713	Yellow flower	100.380
SRP173429	SRR8316895	Juvenile bud stage	102.622
	SRR8316896	Juvenile bud stage	90.347
	SRR8316897	Juvenile bud stage	65.830
	SRR8316894	Third green stage	34.779
	SRR8316900	Third green stage	96.662
	SRR8316901	Third green stage	86.433
	SRR8316898	Complete white stage	47.032
	SRR8316899	Complete white stage	124.417
	SRR8316903	Complete white stage	68.197
	SRR8316902	Silver flowering stage	38.733
	SRR8316904	Silver flowering stage	44.215
	SRR8316905	Silver flowering stage	27.300
	SRR8316906	Gold flowering stage	100.411
	SRR8316907	Gold flowering stage	109.141
	SRR8316908	Gold flowering stage	103.608
SRP132670	SRR6706286	Control	129.335
	SRR6706287	Light intensity 50%	108.684
	SRR6706288	Light intensity 20%	117.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	88.572
	CNS0095593	Slightly white alabastrum(diploid) 2	77.948
	CNS0095594	Slightly white alabastrum(diploid) 3	74.969
	CNS0095595	Whole white alabastrum(diploid) 2	65.550
	CNS0095596	Whole white alabastrum(diploid) 3	73.007
	CNS0095597	Whole white alabastrum(diploid) 4	68.017
	CNS0095598	Silvery flower (diploied) 1	224.000
	CNS0095599	Silvery flower (diploied) 2	205.298
	CNS0095600	Silvery flower (diploied) 3	153.414
	CNS0095601	Golden flower (diploid) 1	257.483
	CNS0095602	Golden flower (diploid) 2	268.600
	CNS0095603	Golden flower (diploid) 3	263.428
	CNS0095604	Slightly white alabastrum(tetraploid) 1	75.392
	CNS0095605	Slightly white alabastrum(tetraploid) 2	84.131
	CNS0095606	Slightly white alabastrum(tetraploid) 3	105.919
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.467
	CNS0095608	Whole white alabastrum(tetraploid) 2	56.750
	CNS0095609	Whole white alabastrum(tetraploid) 3	88.551
	CNS0095610	Silvery flower (tetraploid) 1	146.253
	CNS0095611	Silvery flower (tetraploid) 2	183.947
	CNS0095612	Silvery flower (tetraploid) 3	138.935
	CNS0095613	Golden flower (tetraploid) 1	130.367
	CNS0095614	Golden flower (tetraploid) 2	167.148
	CNS0095615	Golden flower (tetraploid) 3	152.671
CRA001975	CRR073297	Stem 1	198.768
	CRR073298	Stem 2	169.601
	CRR073299	Stem 3	225.494
	CRR073300	Leaf 1	94.412
	CRR073301	Leaf 2	104.819
	CRR073302	Leaf 3	123.906
	CRR073303	Juvenile bud 1	117.941
	CRR073304	Juvenile bud 2	133.296
	CRR073305	Juvenile bud 3	102.733
	CRR073306	Third green 1	65.457
	CRR073307	Third green 2	68.840
	CRR073308	Third green 3	54.619
	CRR073309	Second white 1	91.194
	CRR073310	Second white 2	80.046
	CRR073311	Second white 3	68.156
	CRR073312	Silver flowering 1	60.063
	CRR073313	Silver flowering 2	52.710
	CRR073314	Silver flowering 3	75.801
	CRR073315	Gold flowering 1	1589.979
	CRR073316	Gold flowering 2	1878.451
	CRR073317	Gold flowering 3	1375.632
	CRR073318	Tawny withering 1	172.917
	CRR073319	Tawny withering 2	198.888
	CRR073320	Tawny withering 3	132.188