Gene detail

Detail information of GWHGAAZE018678

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO97370.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q0WM29\|MMSA_ARATH	Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial (Precursor)
trEMBL	tr\|A0A068TM10\|A0A068TM10_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97370.1}
TAIR10	AT2G14170.1	aldehyde dehydrogenase 6B2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22790822	22802515	+
GWHAAZE00000005	mRNA	22790822	22802515	+
GWHAAZE00000005	exon	22790822	22790932	+
GWHAAZE00000005	exon	22792930	22793001	+
GWHAAZE00000005	exon	22793091	22793252	+
GWHAAZE00000005	exon	22793334	22793412	+
GWHAAZE00000005	exon	22793507	22793661	+
GWHAAZE00000005	exon	22793936	22793999	+
GWHAAZE00000005	exon	22794360	22794439	+
GWHAAZE00000005	exon	22794748	22794864	+
GWHAAZE00000005	exon	22796675	22796725	+
GWHAAZE00000005	exon	22796857	22797008	+
GWHAAZE00000005	exon	22798106	22798196	+
GWHAAZE00000005	exon	22798357	22798437	+
GWHAAZE00000005	exon	22798864	22798941	+
GWHAAZE00000005	exon	22799042	22799077	+
GWHAAZE00000005	exon	22799186	22799229	+
GWHAAZE00000005	exon	22799318	22799396	+
GWHAAZE00000005	exon	22799594	22799684	+
GWHAAZE00000005	exon	22800592	22800973	+
GWHAAZE00000005	exon	22802343	22802515	+
GWHAAZE00000005	CDS	22790822	22790932	+
GWHAAZE00000005	CDS	22792930	22793001	+
GWHAAZE00000005	CDS	22793091	22793252	+
GWHAAZE00000005	CDS	22793334	22793412	+
GWHAAZE00000005	CDS	22793507	22793661	+
GWHAAZE00000005	CDS	22793936	22793999	+
GWHAAZE00000005	CDS	22794360	22794439	+
GWHAAZE00000005	CDS	22794748	22794864	+
GWHAAZE00000005	CDS	22796675	22796725	+
GWHAAZE00000005	CDS	22796857	22797008	+
GWHAAZE00000005	CDS	22798106	22798196	+
GWHAAZE00000005	CDS	22798357	22798437	+
GWHAAZE00000005	CDS	22798864	22798941	+
GWHAAZE00000005	CDS	22799042	22799077	+
GWHAAZE00000005	CDS	22799186	22799229	+
GWHAAZE00000005	CDS	22799318	22799396	+
GWHAAZE00000005	CDS	22799594	22799684	+
GWHAAZE00000005	CDS	22800592	22800944	+
GWHAAZE00000005	three_prime_UTR	22800945	22800973	+
GWHAAZE00000005	three_prime_UTR	22802343	22802515	+

Transcript Sequence
>GWHTAAZE018700 ATGCGGTATTTTTTTGCTACAGTGAAAAGATTCAAATCTTTGAGACCTCCAGAAGGGAACTGTAACTCCTCAACAACTACTGAGCCTTCTTGGAGAAGACGCTACCCTCCGAGGGTTCCGAATCTTATTGGAGGTAGATTTGTTGATTCACAATCGCCAACATCCATTGATGTTATAAATCCTGCTACACAACAAGTTGTCTCTCAAGTTCCCCTAACCACCAATGAAGAATTTAGGGCTGCAGTATTTGCTGCAAAACGGGCTTTTTCATCATGGCGAATCACACCAGTTACTACTCGTCAACGCATCATGTTCAAGCTACAAGAACTTATTCGAAGAGACATTGATAAAATTGCCCAGAATATTACTACCGAGCAGGGTAAAACATTGAAGGATGCATTTAGTGATGTGCTTCGTGGGCTTGAGGTGGTGGAACATGCCTGTGGGATGGCAACTTTGCAGATGGGGGAGTTTGTTTCAAATGTATCGAATGGTATTGATAGCTACAGCATTAGAGAGCCAATTGGTATTTGTGCTGGAATTTGCCCTTTCAACTTCCCGGCAATGGTTCCCTTGTGGATGTTTCCAATTGCAGTTACATGCGGTAATACCTTTATTTTAAAGCCATCAGAGAAAGATCCAGGGCCTTGCATGATACTTGCAGAATTAGCAATGGAGGCTGGTTTGCCAAATGGTGTCTTAAATATTGTTCATGGCACCTATGATATTGTTAATGCCATTTGTGATGATGAAGATATCAAAGCTGTATCATTTGTTGGTCCAGATACCGTAAGTTCTTTCTCAGCATTGTTTTCTCTTCAAGTGAAGCAGCTGTCAATTGCTGGCTCATACATACATGCAAGAGCATCTGCTAACGGTAAACGTGTTCAGTCTAATATTGGAGCCAAAAATCATGCAATTATCATGCCTGATGCATGCATGGGTGCGACTTTGGATGCTTTAGTTGCAGCTGGGTTCGGTGCTGCTGGACAAAGGTGCACAGCACTCAGCACTGTTGTCTTTGTTGGAGGCTCAAAATCATGGGAAGCAAAACTAGTGGAGCGTGCCAAGGCACTCAAAGTAAATGCTGGAACTGAACCTGATGCAGACCTGGGCCCAGTGATTAGCAAGCAGGCCAAGGAAAGAATATGCAGATTGATCCAACTGGGTATTGAGAGTGGCGCAAGACCAGTTCTTGATGGGAGACAGATTGTGGTTCCAAAATATGAACTGGGCAATTTTATCGGTCCCACCATCTTATGTGACGTCACAGACAACATGGAGTGTTACAAGGAGGAAATTATTGGCCCAGTTCTCCTTTGCATGCAGGCTGACAGCTTAGAAGAGGCCATTAGTATTGTTAACAGAAATAAATACGGAAATGGGGCTTCTATATTTACTTCATCCGGTGCAGCTGCAAGGAAATTCCAGACTGCTATAGAAGCTGGACAGGTTGGCATAAATGTTCCTGTTCCAGCCCCACTACCCTTTTTCTCATTTACTGGGTCCAAAGCATCATTTGCTGGAGATCTCAACTTTTATGGCAAAGCTGGACTTCATTTTTACACCCAAATAAAAACAGTGACCCAACAATGGAGGGATTTTCATAGTAGCGACGAAGTGTCCCCAACATTACCACCAAATGATTGCCCAAGTAGTGACAGTGTATCCGCAGCATTGCAATCGAGGGATTTCCAGAGTAACGGGGTCTCCCTGGCACTGCCATCGAGGGACTTCCAAAGCAGTGACGACGCATCCCTCGCATTGCAACTCAAGGATTTCCAAAGCAACGGTGGAGATCCCCTGGCTTTTCAATCAAATGATTTCCCTAATAGTGAGGGAATGTCACCAAGGATGCCAACATCCGATGGATCACAGTGGACCCAAATTGCTTAGATCATAATTTCATTTGGAACTTGCAGACTGTAAGGGAGGAGACCTGAAGGTGTCGATGCTTATCTTAGAAGTTCCTGCTCAGGTTTCTTGCCAGTTGGTGCATCTCTCTCTCTCTCTCAATCTCCCCTTTTCACTTTTTCTAAATCTAATATTGTGGGGACTAAGAATAAGTATGCGGTAGTAAAGGCTTAGATATAACTAT

Network for GWHGAAZE018678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	47	528	7.40E-126

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00140	mmsA, iolA, ALDH6A1	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Inositol phosphate metabolism	map00562
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0004491	molecular_function	methylmalonate-semialdehyde dehydrogenase (acylating) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.377
	SRR3591706	second leaf	12.429
	SRR3591707	mature leaf	13.914
	SRR3591708	Shoot apex	20.418
	SRR3591709	Stem	29.438
	SRR3591710	White floral bud	22.841
	SRR3591711	White flower	29.238
	SRR3591712	Green floral bud	25.820
	SRR3591713	Yellow flower	18.059
SRP173429	SRR8316895	Juvenile bud stage	21.700
	SRR8316896	Juvenile bud stage	27.855
	SRR8316897	Juvenile bud stage	16.376
	SRR8316894	Third green stage	13.216
	SRR8316900	Third green stage	22.183
	SRR8316901	Third green stage	22.306
	SRR8316898	Complete white stage	9.314
	SRR8316899	Complete white stage	33.986
	SRR8316903	Complete white stage	14.479
	SRR8316902	Silver flowering stage	9.268
	SRR8316904	Silver flowering stage	12.025
	SRR8316905	Silver flowering stage	6.491
	SRR8316906	Gold flowering stage	17.940
	SRR8316907	Gold flowering stage	16.245
	SRR8316908	Gold flowering stage	21.982
SRP132670	SRR6706286	Control	28.844
	SRR6706287	Light intensity 50%	29.855
	SRR6706288	Light intensity 20%	30.434
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.256
	CNS0095593	Slightly white alabastrum(diploid) 2	20.046
	CNS0095594	Slightly white alabastrum(diploid) 3	19.576
	CNS0095595	Whole white alabastrum(diploid) 2	13.915
	CNS0095596	Whole white alabastrum(diploid) 3	13.254
	CNS0095597	Whole white alabastrum(diploid) 4	12.234
	CNS0095598	Silvery flower (diploied) 1	24.957
	CNS0095599	Silvery flower (diploied) 2	22.310
	CNS0095600	Silvery flower (diploied) 3	22.008
	CNS0095601	Golden flower (diploid) 1	22.631
	CNS0095602	Golden flower (diploid) 2	24.844
	CNS0095603	Golden flower (diploid) 3	25.748
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.843
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.205
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.270
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.763
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.730
	CNS0095610	Silvery flower (tetraploid) 1	28.436
	CNS0095611	Silvery flower (tetraploid) 2	31.600
	CNS0095612	Silvery flower (tetraploid) 3	26.110
	CNS0095613	Golden flower (tetraploid) 1	13.463
	CNS0095614	Golden flower (tetraploid) 2	24.640
	CNS0095615	Golden flower (tetraploid) 3	14.751
CRA001975	CRR073297	Stem 1	34.794
	CRR073298	Stem 2	27.400
	CRR073299	Stem 3	26.829
	CRR073300	Leaf 1	25.099
	CRR073301	Leaf 2	23.090
	CRR073302	Leaf 3	18.790
	CRR073303	Juvenile bud 1	19.385
	CRR073304	Juvenile bud 2	12.599
	CRR073305	Juvenile bud 3	23.463
	CRR073306	Third green 1	4.653
	CRR073307	Third green 2	3.798
	CRR073308	Third green 3	5.229
	CRR073309	Second white 1	5.209
	CRR073310	Second white 2	6.097
	CRR073311	Second white 3	6.564
	CRR073312	Silver flowering 1	3.139
	CRR073313	Silver flowering 2	5.635
	CRR073314	Silver flowering 3	4.926
	CRR073315	Gold flowering 1	11.520
	CRR073316	Gold flowering 2	15.900
	CRR073317	Gold flowering 3	10.885
	CRR073318	Tawny withering 1	20.555
	CRR073319	Tawny withering 2	20.211
	CRR073320	Tawny withering 3	20.359