Detail information of GWHGAAZE018681


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009793395.11.35846E-64PREDICTED: uncharacterized protein LOC104240274 isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9S7V4|HA22A_ARATH8E-32HVA22-like protein a
trEMBLtr|M1CTZ0|M1CTZ0_SOLTU5E-64Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400074627}
TAIR10AT1G74520.17E-28HVA22 homologue A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2282319922828778-
GWHAAZE00000005mRNA2282319922828778-
GWHAAZE00000005exon2282319922823810-
GWHAAZE00000005exon2282479422824874-
GWHAAZE00000005exon2282498522825065-
GWHAAZE00000005exon2282525022825336-
GWHAAZE00000005exon2282543922825519-
GWHAAZE00000005exon2282571522825801-
GWHAAZE00000005exon2282589822825978-
GWHAAZE00000005exon2282617022826256-
GWHAAZE00000005exon2282635622826436-
GWHAAZE00000005exon2282663222826712-
GWHAAZE00000005exon2282681922827068-
GWHAAZE00000005exon2282782322827945-
GWHAAZE00000005exon2282829322828319-
GWHAAZE00000005exon2282872322828778-
GWHAAZE00000005CDS2282872322828778-
GWHAAZE00000005CDS2282829322828319-
GWHAAZE00000005CDS2282782322827945-
GWHAAZE00000005CDS2282681922827068-
GWHAAZE00000005CDS2282663222826712-
GWHAAZE00000005CDS2282635622826436-
GWHAAZE00000005CDS2282617022826256-
GWHAAZE00000005CDS2282589822825978-
GWHAAZE00000005CDS2282571522825801-
GWHAAZE00000005CDS2282543922825519-
GWHAAZE00000005CDS2282525022825336-
GWHAAZE00000005CDS2282498522825065-
GWHAAZE00000005CDS2282479422824874-
GWHAAZE00000005CDS2282319922823810-
Transcript Sequence

Network for GWHGAAZE018681

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03134.20TB2_DP1_HVA22271004.20E-19
PF12874.8zf-met4394631.70E-09
PF12874.8zf-met5385617.10E-06
PF12874.8zf-met5745984.60E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf115.476
SRR3591706second leaf8.195
SRR3591707mature leaf2.811
SRR3591708Shoot apex25.975
SRR3591709Stem39.076
SRR3591710White floral bud14.615
SRR3591711White flower12.074
SRR3591712Green floral bud19.685
SRR3591713Yellow flower3.739
SRP173429 SRR8316895Juvenile bud stage 332.391
SRR8316896Juvenile bud stage 343.371
SRR8316897Juvenile bud stage 375.046
SRR8316894Third green stage 23.221
SRR8316900Third green stage 59.242
SRR8316901Third green stage 124.651
SRR8316898Complete white stage 4.565
SRR8316899Complete white stage 232.818
SRR8316903Complete white stage 8.073
SRR8316902Silver flowering stage3.171
SRR8316904Silver flowering stage2.418
SRR8316905Silver flowering stage1.487
SRR8316906Gold flowering stage 5.455
SRR8316907Gold flowering stage 2.829
SRR8316908Gold flowering stage 3.223
SRP132670SRR6706286Control21.727
SRR6706287Light intensity 50%24.470
SRR6706288Light intensity 20%20.609
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1281.020
CNS0095593Slightly white alabastrum(diploid) 2403.250
CNS0095594Slightly white alabastrum(diploid) 3441.052
CNS0095595Whole white alabastrum(diploid) 2315.722
CNS0095596Whole white alabastrum(diploid) 325.037
CNS0095597Whole white alabastrum(diploid) 4167.067
CNS0095598Silvery flower (diploied) 1238.076
CNS0095599Silvery flower (diploied) 2385.862
CNS0095600Silvery flower (diploied) 3139.834
CNS0095601Golden flower (diploid) 1448.845
CNS0095602Golden flower (diploid) 2279.229
CNS0095603Golden flower (diploid) 3284.836
CNS0095604Slightly white alabastrum(tetraploid) 19.702
CNS0095605Slightly white alabastrum(tetraploid) 210.193
CNS0095606Slightly white alabastrum(tetraploid) 320.234
CNS0095607Whole white alabastrum(tetraploid) 18.231
CNS0095608Whole white alabastrum(tetraploid) 25.641
CNS0095609Whole white alabastrum(tetraploid) 311.160
CNS0095610Silvery flower (tetraploid) 15.867
CNS0095611Silvery flower (tetraploid) 25.243
CNS0095612Silvery flower (tetraploid) 36.878
CNS0095613Golden flower (tetraploid) 11.964
CNS0095614Golden flower (tetraploid) 22.959
CNS0095615Golden flower (tetraploid) 31.392
CRA001975CRR073297Stem 194.038
CRR073298Stem 278.730
CRR073299Stem 328.633
CRR073300Leaf 1119.596
CRR073301Leaf 2110.063
CRR073302Leaf 335.980
CRR073303Juvenile bud 161.012
CRR073304Juvenile bud 219.349
CRR073305Juvenile bud 335.222
CRR073306Third green 14.477
CRR073307Third green 24.580
CRR073308Third green 33.324
CRR073309Second white 18.528
CRR073310Second white 29.892
CRR073311Second white 38.202
CRR073312Silver flowering 110.196
CRR073313Silver flowering 28.821
CRR073314Silver flowering 319.579
CRR073315Gold flowering 119.973
CRR073316Gold flowering 256.298
CRR073317Gold flowering 312.091
CRR073318Tawny withering 174.230
CRR073319Tawny withering 2258.220
CRR073320Tawny withering 360.550