Gene detail

Detail information of GWHGAAZE018683

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265008.1	2.66035E-24	PREDICTED: uncharacterized protein LOC100247569 [Vitis vinifera]
trEMBL	tr\|F6HJF5\|F6HJF5_VITVI	3E-25	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52354.1}
TAIR10	AT5G61190.1	0.0000001	putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22842882	22844914	-
GWHAAZE00000005	mRNA	22842882	22844914	-
GWHAAZE00000005	exon	22842882	22843382	-
GWHAAZE00000005	exon	22844355	22844435	-
GWHAAZE00000005	exon	22844547	22844627	-
GWHAAZE00000005	exon	22844810	22844914	-
GWHAAZE00000005	CDS	22844810	22844914	-
GWHAAZE00000005	CDS	22844547	22844627	-
GWHAAZE00000005	CDS	22844355	22844435	-
GWHAAZE00000005	CDS	22842882	22843382	-

Transcript Sequence
>GWHTAAZE018705 ATGCTACAGTTGTTTCAGTCAAAACTTGCTAAACCAAATCTTGATGCGAAAGAGAAAATGGCAGTTACAATCACTGAGAAAAAAGAAATGGTTACAACAATTGAGTCAAAGGGTGCAAAACCTGATATGGAAGAGATCAAGGCAACCGCAAATACAGAGGAAAAAGAAAAGGCAACAAAAATTAAGTCAGTGGGAGCAAAACCTAATCTTAATGCAGAAGAGATCAAGGTAGCAAATACAGAGAAAAAGGAAATGGCAGCAATTGACGTAAAGCGCGCAAATACAAATCTTGTAGAGACCGAGAGGAGAAAACCCGAAGTTGTGGAGGTTACAGAAATGAATTATTGTCCTTCCTCTTCGGATAAAGTTCAAAGACAGTGGACTTGTGCAGTATGTCAAGTGACAACTACGAGCCAAACAACACTCAATTCCCATTTTCGAGGTAAAAAACACATAGCCAAGTGCCAGGAGCTCAAAGCCAAGATGCAAACACCCAAAAACGACTACTCTCCTTTATCCTCGACGACAAAGAAATTGGGACAAGCTAATCAAAATCCGAACAAGGGCATATCCGGGGATGGAGTAAACCGGACTAAGAGTGAACAACAGGAGAAAAAGGTTCAACTTAATAATGGGAATATAAAATCGAACAAAGATAATGCAGAGAAGAAGCATTGGTGCACTGTATGCAATGTGAGGTGCAGTGGGCAGATTGACTTGGTCTCTCACCTTAAGGGGAAGAAGCATTTGTCTAAGGTTGGGTCATAA

Network for GWHGAAZE018683

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12874.8	zf-met	127	151	5.90E-10
PF12874.8	zf-met	226	249	1.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.587
	SRR3591706	second leaf	2.898
	SRR3591707	mature leaf	3.400
	SRR3591708	Shoot apex	13.606
	SRR3591709	Stem	27.052
	SRR3591710	White floral bud	16.674
	SRR3591711	White flower	13.341
	SRR3591712	Green floral bud	14.006
	SRR3591713	Yellow flower	4.211
SRP173429	SRR8316895	Juvenile bud stage	27.975
	SRR8316896	Juvenile bud stage	34.444
	SRR8316897	Juvenile bud stage	21.171
	SRR8316894	Third green stage	8.994
	SRR8316900	Third green stage	21.484
	SRR8316901	Third green stage	27.449
	SRR8316898	Complete white stage	7.598
	SRR8316899	Complete white stage	39.544
	SRR8316903	Complete white stage	16.588
	SRR8316902	Silver flowering stage	8.077
	SRR8316904	Silver flowering stage	10.983
	SRR8316905	Silver flowering stage	4.970
	SRR8316906	Gold flowering stage	15.573
	SRR8316907	Gold flowering stage	13.789
	SRR8316908	Gold flowering stage	12.412
SRP132670	SRR6706286	Control	11.315
	SRR6706287	Light intensity 50%	14.369
	SRR6706288	Light intensity 20%	13.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.076
	CNS0095593	Slightly white alabastrum(diploid) 2	33.871
	CNS0095594	Slightly white alabastrum(diploid) 3	32.386
	CNS0095595	Whole white alabastrum(diploid) 2	25.958
	CNS0095596	Whole white alabastrum(diploid) 3	10.826
	CNS0095597	Whole white alabastrum(diploid) 4	22.259
	CNS0095598	Silvery flower (diploied) 1	21.986
	CNS0095599	Silvery flower (diploied) 2	23.289
	CNS0095600	Silvery flower (diploied) 3	16.190
	CNS0095601	Golden flower (diploid) 1	28.471
	CNS0095602	Golden flower (diploid) 2	18.838
	CNS0095603	Golden flower (diploid) 3	18.817
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.176
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.568
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.207
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.834
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.858
	CNS0095610	Silvery flower (tetraploid) 1	10.504
	CNS0095611	Silvery flower (tetraploid) 2	12.412
	CNS0095612	Silvery flower (tetraploid) 3	13.331
	CNS0095613	Golden flower (tetraploid) 1	6.681
	CNS0095614	Golden flower (tetraploid) 2	7.173
	CNS0095615	Golden flower (tetraploid) 3	6.644
CRA001975	CRR073297	Stem 1	19.153
	CRR073298	Stem 2	15.633
	CRR073299	Stem 3	2.613
	CRR073300	Leaf 1	17.661
	CRR073301	Leaf 2	21.376
	CRR073302	Leaf 3	4.776
	CRR073303	Juvenile bud 1	8.088
	CRR073304	Juvenile bud 2	4.349
	CRR073305	Juvenile bud 3	6.790
	CRR073306	Third green 1	1.304
	CRR073307	Third green 2	1.494
	CRR073308	Third green 3	2.140
	CRR073309	Second white 1	1.613
	CRR073310	Second white 2	3.368
	CRR073311	Second white 3	2.867
	CRR073312	Silver flowering 1	1.142
	CRR073313	Silver flowering 2	0.303
	CRR073314	Silver flowering 3	1.155
	CRR073315	Gold flowering 1	0.685
	CRR073316	Gold flowering 2	4.913
	CRR073317	Gold flowering 3	1.532
	CRR073318	Tawny withering 1	9.342
	CRR073319	Tawny withering 2	31.301
	CRR073320	Tawny withering 3	7.419