Gene detail

Detail information of GWHGAAZE018702

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003545727.2	2.83559E-83	PREDICTED: probable ubiquitin-like-specific protease 2B-like [Glycine max]
Swissprot	tr\|Q0WKV8\|ULP2A_ARATH	2E-55	Probable ubiquitin-like-specific protease 2A
trEMBL	tr\|A0A072V377\|A0A072V377_MEDTR	4E-78	Ulp1 protease family, carboxy-terminal domain protein {ECO:0000313\|EMBL:KEH36454.1}
TAIR10	AT1G09730.1	9E-51	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	23028074	23037236	-
GWHAAZE00000005	mRNA	23028074	23037236	-
GWHAAZE00000005	exon	23037221	23037236	-
GWHAAZE00000005	exon	23036573	23036805	-
GWHAAZE00000005	exon	23036396	23036477	-
GWHAAZE00000005	exon	23036239	23036288	-
GWHAAZE00000005	exon	23035885	23036070	-
GWHAAZE00000005	exon	23035714	23035792	-
GWHAAZE00000005	exon	23035116	23035319	-
GWHAAZE00000005	exon	23032686	23032794	-
GWHAAZE00000005	exon	23031772	23031846	-
GWHAAZE00000005	exon	23029318	23029458	-
GWHAAZE00000005	exon	23028334	23028534	-
GWHAAZE00000005	exon	23028074	23028248	-
GWHAAZE00000005	CDS	23037221	23037236	-
GWHAAZE00000005	CDS	23036573	23036805	-
GWHAAZE00000005	CDS	23036396	23036477	-
GWHAAZE00000005	CDS	23036239	23036288	-
GWHAAZE00000005	CDS	23035885	23036070	-
GWHAAZE00000005	CDS	23035714	23035792	-
GWHAAZE00000005	CDS	23035116	23035319	-
GWHAAZE00000005	CDS	23032686	23032794	-
GWHAAZE00000005	CDS	23031772	23031846	-
GWHAAZE00000005	CDS	23029318	23029458	-
GWHAAZE00000005	CDS	23028334	23028534	-
GWHAAZE00000005	CDS	23028074	23028248	-

Transcript Sequence
>GWHTAAZE018724 ATGGATCAATCTAAAGTTGCACACGGGACCAAGACTCAGGGGAAGGACTTCAGGAATGAACCATTAGATGTTGATGCTGTTGACGATGTTGTGGAAGAGAGGATCTCTGGGGATGCCACTGCACCATCCACTTCTTCAAACTATAAGCCAATGACTCATTATTGTCCTAATCATCATGACTCCCCAGGTTCTCTATGTGGATCAAAACTCCACAAAGCTAGAGCCCAAAATCTTGGAGTCACTTCCACTAATATGCCAATTGGTATAGATTCTGATGATGAGGGGAACACTGAATTGTGTGCATCAACATCTACCTCTAGTCTTCTAGAAGGTCCATTAGAAGTACAATTGCAAGAGCATGATCCTGGTGGATGTGACATTACCGTGGTTGTTCTTTTCCCTAACTACATTATCTACGGAGATATCTATTCTTCAGAGTCGCGGTTGACTTTCTCTCGCAGTTGCATTAAGCTTGATGGTTCAACTTTATATGGGGCCAAGGCACCTTTTAGCCTTCTTTGGGCAGTTACTGATATTCTTAACATCGATGCTCAGTGGTGTGAACAGCTCAAAACAGCTACTCTAAACTTCCGTTTAAAACCCAAGGATAGAAAAGTAGCTGAAAGTCCTAATGGTTCAGGTACTTACGTCGACTCTCCCAGGCACGTTGTCTCTCCTATGTTCTCCTCTCTCCAACGTCGTCTCTCCTCTCCGACATCTCTCACAGCCGTTCGAATAGAGGAAAACACTGGTCGTTCGTCGTTGCTGCTGCTTCTCTCTTCTGTTCGTTCATTCGTCTCTCTTCTGTTCGTTCGTCGTCTCTCCTCCCATTCGACTCTCCTTACGCAAGGCATTATGGAGTTGAAATTTTCTGTTTTTGATCCTCAATGGTCTAAAAGACAGGAAGAAATCAAATTGTTGGATGCGAGATACAATGACATATGGAATGTTGCTTTTGATATTGATGCAGCGAGGAATAAAGATGTTTTTCTGGGGCAAAATAGTATTTTCTGCTCAAAGCATTACTTTGTAAATGAATTAAGTCTGAATGAGTCCTTTGAAGAGATTATCTATCCAAAAGGGGATCATGATGCTGTTTCAATTAGTAAGAGAGACATTCAGCTATTACAGCCAGAGGCATTCCTCAATGATACTATCATTGACTTCTATATTTTATATCTAAAGAACAAAGTCAAACTGGAGGAAAGGCATAGGTTCCACTTTTTTAATAGTTTTTTCTTTCGTAAGCTGGCTGATCTGGACAAAGATCAATCTAGAGCCTGTGAAAGCACAGAGGCTTTCCAACGTGTTCGTAAATGGACAAGGAAAGTGGATATTTTTGAGAAGGATTACATCTTTATTCCCGTAAACTTCAGTCTTCATTGGAGCTTAATAGTTATCTGTCACCCTGGAGAAGTGGTTAATAACCAAGGCAAGATAGTACTTGTTCATATGCTTGTGTGTAATGACGTAATGTTATTTAATCCGATTTTCTCCCCCTCAATGTTTCCAAATATCGTGCAGATAAAGAAATGGAGAATAACTCAAGTA

Network for GWHGAAZE018702

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.20	Peptidase_C48	381	472	5.10E-23

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.636
	SRR3591706	second leaf	3.822
	SRR3591707	mature leaf	3.542
	SRR3591708	Shoot apex	5.764
	SRR3591709	Stem	7.410
	SRR3591710	White floral bud	2.677
	SRR3591711	White flower	2.622
	SRR3591712	Green floral bud	4.133
	SRR3591713	Yellow flower	0.860
SRP173429	SRR8316895	Juvenile bud stage	5.879
	SRR8316896	Juvenile bud stage	5.846
	SRR8316897	Juvenile bud stage	2.370
	SRR8316894	Third green stage	2.693
	SRR8316900	Third green stage	6.152
	SRR8316901	Third green stage	5.943
	SRR8316898	Complete white stage	1.698
	SRR8316899	Complete white stage	8.940
	SRR8316903	Complete white stage	4.904
	SRR8316902	Silver flowering stage	2.385
	SRR8316904	Silver flowering stage	3.568
	SRR8316905	Silver flowering stage	0.979
	SRR8316906	Gold flowering stage	4.020
	SRR8316907	Gold flowering stage	3.332
	SRR8316908	Gold flowering stage	3.849
SRP132670	SRR6706286	Control	1.845
	SRR6706287	Light intensity 50%	2.181
	SRR6706288	Light intensity 20%	2.273
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.945
	CNS0095593	Slightly white alabastrum(diploid) 2	2.343
	CNS0095594	Slightly white alabastrum(diploid) 3	2.687
	CNS0095595	Whole white alabastrum(diploid) 2	2.470
	CNS0095596	Whole white alabastrum(diploid) 3	1.318
	CNS0095597	Whole white alabastrum(diploid) 4	2.211
	CNS0095598	Silvery flower (diploied) 1	5.033
	CNS0095599	Silvery flower (diploied) 2	3.704
	CNS0095600	Silvery flower (diploied) 3	8.417
	CNS0095601	Golden flower (diploid) 1	3.575
	CNS0095602	Golden flower (diploid) 2	8.481
	CNS0095603	Golden flower (diploid) 3	7.330
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.951
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.377
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.720
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.544
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.887
	CNS0095610	Silvery flower (tetraploid) 1	6.540
	CNS0095611	Silvery flower (tetraploid) 2	6.522
	CNS0095612	Silvery flower (tetraploid) 3	3.406
	CNS0095613	Golden flower (tetraploid) 1	2.332
	CNS0095614	Golden flower (tetraploid) 2	4.120
	CNS0095615	Golden flower (tetraploid) 3	3.386
CRA001975	CRR073297	Stem 1	2.640
	CRR073298	Stem 2	2.292
	CRR073299	Stem 3	2.385
	CRR073300	Leaf 1	3.670
	CRR073301	Leaf 2	2.768
	CRR073302	Leaf 3	1.890
	CRR073303	Juvenile bud 1	2.427
	CRR073304	Juvenile bud 2	1.184
	CRR073305	Juvenile bud 3	1.749
	CRR073306	Third green 1	0.494
	CRR073307	Third green 2	0.668
	CRR073308	Third green 3	0.804
	CRR073309	Second white 1	0.630
	CRR073310	Second white 2	0.507
	CRR073311	Second white 3	0.650
	CRR073312	Silver flowering 1	0.387
	CRR073313	Silver flowering 2	0.364
	CRR073314	Silver flowering 3	0.670
	CRR073315	Gold flowering 1	0.953
	CRR073316	Gold flowering 2	1.608
	CRR073317	Gold flowering 3	0.996
	CRR073318	Tawny withering 1	3.145
	CRR073319	Tawny withering 2	1.164
	CRR073320	Tawny withering 3	2.659