Gene detail

Detail information of GWHGAAZE018704

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087942.1	5.4371E-134	PREDICTED: beta carbonic anhydrase 5, chloroplastic isoform X2 [Sesamum indicum]
Swissprot	tr\|Q94CE3\|BCA5_ARATH	2E-117	Beta carbonic anhydrase 5, chloroplastic (Precursor)
trEMBL	tr\|A0A061E8X3\|A0A061E8X3_THECC	5E-134	Carbonic anhydrase {ECO:0000256\|RuleBase:RU003956}
TAIR10	AT4G33580.1	5E-95	beta carbonic anhydrase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	23117984	23121606	+
GWHAAZE00000005	mRNA	23117984	23121606	+
GWHAAZE00000005	exon	23117984	23118050	+
GWHAAZE00000005	exon	23118168	23118231	+
GWHAAZE00000005	exon	23118939	23119100	+
GWHAAZE00000005	exon	23119176	23119224	+
GWHAAZE00000005	exon	23119651	23119764	+
GWHAAZE00000005	exon	23119895	23119948	+
GWHAAZE00000005	exon	23120171	23120253	+
GWHAAZE00000005	exon	23120382	23120487	+
GWHAAZE00000005	exon	23121159	23121606	+
GWHAAZE00000005	CDS	23117984	23118050	+
GWHAAZE00000005	CDS	23118168	23118231	+
GWHAAZE00000005	CDS	23118939	23119100	+
GWHAAZE00000005	CDS	23119176	23119224	+
GWHAAZE00000005	CDS	23119651	23119764	+
GWHAAZE00000005	CDS	23119895	23119948	+
GWHAAZE00000005	CDS	23120171	23120253	+
GWHAAZE00000005	CDS	23120382	23120487	+
GWHAAZE00000005	CDS	23121159	23121365	+
GWHAAZE00000005	three_prime_UTR	23121366	23121606	+

Transcript Sequence
>GWHTAAZE018726 CTTTGGTTCAAAGTTCAAATTCTTGGAAAGCAAGCAGATCCAGTTGAGATTATCGAATTTCGAGTAGTTGTTAATGTTTATAGCCCATTCGTTCTGATAGGCCTAATTGTAGGATTTGGTCAAGAACTGAGGAGCAACCCAGCCCTGAGATTGAAGGCCTCAATGGACGCACCGGCACTGACCCAGGAACTTAAAAATGACACACAGAAGAGCATAATAGGAACTCAGAGTGGGGGTGACCTGTTCAATAAAATGAAACATCGATTTCTCAATTTCAAAGAAGATAAATACTTGAAAAATGTGGAACACTATCAAAATCTTGCCAAAAGTCAGGCCCCAAAGTTCTTGGTGATTGCTTGTGCAGATTCGAGGGTTTGCCCCTCCCAAATCCTAGGTTTTCAACCTGGAGAAGCCTTTATAGTCCGCAATGTGGCGAATCTGGTCCCCCCATTTGAGACTGGACCTTCAGAAACAAAAGCTGCCCTCGAATTTTCCGTGAATACTCTGGAAGTCCCAAATATACTAGTAATTGGCCACAGCTGCTGTGGAGGCATTCGTGCCCTAATGGGTATGCAAGATGATGGAAATTCAAGTAGCTTTATTCGAAGTTGGGTAGTTGTCGGGAACAATGCAAGGTTAAGCACGAAGGCTGTTGCTTCCAACCTCAGCTTTGACCAGCAGTGTAGACACTGTGAGAAGGAATCGATCAACCGTTCGATGTTGAACTTGCTTACTTACCCGTGGATAGAAGAAAGGGTGGCAAAAGGCCTTCTCTGTATTCATGGCGGGTACTATGATTTTGTTGACTGTACATTTGAGAAGTGGACTCTTGATTATATTGGGAGTAGTTCTAAGGTCGAAAGTGGTGATGTATTTTCCATCCAAAACCGAGAATTTTGGTGCTGAGCTGTATCTGTTTCTCTATTAGTTCTGTTGTTATAATTGCTCTGGCTATTTGTTGGCTAAAATCATGTAATAAGACTAGTTCAGATTTGGCCTTTGATTTATAATTATGAGATCATTTGTGATTCGATCTCCCCTGTTTTATATGTGTTTTAATGAGAATGTTCATTTCATGTAATGGGTTTGTACTGAAATTTTTATGTGGTCAAAGAAATATATTGCTGATTTAATATGTTTACCTTAA

Network for GWHGAAZE018704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00484.20	Pro_CA	116	269	7.50E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01673	cynT, can	Metabolic pathways	map01100
K01673	cynT, can	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0015976	biological_process	carbon utilization
GO:0004089	molecular_function	carbonate dehydratase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.581
	SRR3591706	second leaf	44.590
	SRR3591707	mature leaf	18.576
	SRR3591708	Shoot apex	43.221
	SRR3591709	Stem	34.808
	SRR3591710	White floral bud	45.033
	SRR3591711	White flower	33.278
	SRR3591712	Green floral bud	47.862
	SRR3591713	Yellow flower	37.171
SRP173429	SRR8316895	Juvenile bud stage	19.288
	SRR8316896	Juvenile bud stage	34.068
	SRR8316897	Juvenile bud stage	16.931
	SRR8316894	Third green stage	13.825
	SRR8316900	Third green stage	42.316
	SRR8316901	Third green stage	47.640
	SRR8316898	Complete white stage	21.644
	SRR8316899	Complete white stage	62.496
	SRR8316903	Complete white stage	32.557
	SRR8316902	Silver flowering stage	12.710
	SRR8316904	Silver flowering stage	16.096
	SRR8316905	Silver flowering stage	7.858
	SRR8316906	Gold flowering stage	29.719
	SRR8316907	Gold flowering stage	29.596
	SRR8316908	Gold flowering stage	35.756
SRP132670	SRR6706286	Control	40.894
	SRR6706287	Light intensity 50%	48.348
	SRR6706288	Light intensity 20%	51.700
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.271
	CNS0095593	Slightly white alabastrum(diploid) 2	36.624
	CNS0095594	Slightly white alabastrum(diploid) 3	29.164
	CNS0095595	Whole white alabastrum(diploid) 2	35.507
	CNS0095596	Whole white alabastrum(diploid) 3	39.712
	CNS0095597	Whole white alabastrum(diploid) 4	32.942
	CNS0095598	Silvery flower (diploied) 1	23.775
	CNS0095599	Silvery flower (diploied) 2	18.349
	CNS0095600	Silvery flower (diploied) 3	17.151
	CNS0095601	Golden flower (diploid) 1	20.096
	CNS0095602	Golden flower (diploid) 2	15.955
	CNS0095603	Golden flower (diploid) 3	15.203
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.101
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.738
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.958
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.388
	CNS0095610	Silvery flower (tetraploid) 1	28.839
	CNS0095611	Silvery flower (tetraploid) 2	15.125
	CNS0095612	Silvery flower (tetraploid) 3	24.390
	CNS0095613	Golden flower (tetraploid) 1	20.686
	CNS0095614	Golden flower (tetraploid) 2	23.349
	CNS0095615	Golden flower (tetraploid) 3	13.900
CRA001975	CRR073297	Stem 1	32.223
	CRR073298	Stem 2	31.697
	CRR073299	Stem 3	15.777
	CRR073300	Leaf 1	58.105
	CRR073301	Leaf 2	55.370
	CRR073302	Leaf 3	28.486
	CRR073303	Juvenile bud 1	30.839
	CRR073304	Juvenile bud 2	37.269
	CRR073305	Juvenile bud 3	27.315
	CRR073306	Third green 1	8.927
	CRR073307	Third green 2	7.911
	CRR073308	Third green 3	11.081
	CRR073309	Second white 1	5.590
	CRR073310	Second white 2	10.632
	CRR073311	Second white 3	7.686
	CRR073312	Silver flowering 1	4.962
	CRR073313	Silver flowering 2	3.640
	CRR073314	Silver flowering 3	5.823
	CRR073315	Gold flowering 1	16.051
	CRR073316	Gold flowering 2	19.525
	CRR073317	Gold flowering 3	10.309
	CRR073318	Tawny withering 1	34.427
	CRR073319	Tawny withering 2	30.872
	CRR073320	Tawny withering 3	31.056