Gene detail

Detail information of GWHGAAZE018708

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006340095.1	0	PREDICTED: putative disease resistance protein RGA1-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q7XBQ9\|RGA2_SOLBU	8E-132	Disease resistance protein RGA2
trEMBL	tr\|F6HKZ6\|F6HKZ6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55134.1}
TAIR10	AT3G14470.1	6E-77	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	23138122	23144115	+
GWHAAZE00000005	mRNA	23138122	23144115	+
GWHAAZE00000005	exon	23138122	23140685	+
GWHAAZE00000005	exon	23141408	23141517	+
GWHAAZE00000005	exon	23142774	23142850	+
GWHAAZE00000005	exon	23143195	23143450	+
GWHAAZE00000005	exon	23143949	23144115	+
GWHAAZE00000005	CDS	23138122	23140685	+
GWHAAZE00000005	CDS	23141408	23141517	+
GWHAAZE00000005	CDS	23142774	23142850	+
GWHAAZE00000005	CDS	23143195	23143450	+
GWHAAZE00000005	CDS	23143949	23144115	+

Transcript Sequence
>GWHTAAZE018730 ATGGCAGAATCATTTGTATTTGAAATCGCCGGGCAGATTTTGGGCAAGTTAACCACTCTGGCATTTCGTGAGATTGGACTGATATGGGGCTTGAAAAGTGAGTTCAAAAGGCTTGAACTCACCGTATCTGCAATCAAAGCTGTTCTTCTGGACGCCGCTGAGCAAAAGAAAAAGAGCCGACATGTAGAGGACTGGCTTGAAAAGCTTCAAGAAGTTCTTTACGACGTTGACGACTTACTCGATGATTTCAGCACTGAATATTTGCGACGAAAAGTGGTGATCAAAGGAAGCAAGTGGAAAAAGGTAAGCAACTTCTTTTTGAGTTCCAATTCACTTACTCTTCGTGTCACTATGAGTCGTAAATTAAAGAAGATAAGGAGCAGATTGGAAGATATTGATGCTGACAGGAAAAAATTCGAGTTCGTTGAGCGTGTCGCCAATAGCCCGGGTATGTACCCATTAAGGGAGCAAACCCATTCTTTTGTACACGCATCAGATGTTATTGGAAGAGACCTTGATAAAAGAACAATTGTAGAGCTTTTGTTAAGCTCCGGTTCTAGCCCGACTGAGAATATCTCTGTTCTTCCTATAGTTGGACTAGGAGGGCTTGGCAAGACCACAGTTGCTAAATTTGTTTACAATGATGATGCGATTGTTTCAAATTTTAAAACAAGACTCTGGATTTGCGTGTCAGAAGACTTTGATTTGAAAAAGCTGATTGAAAAAATCATGAAAGATGCTACAGGAGGAGTTGATCATGCCCACTTAGATCTCAACCAATTGCAAGCTTGTCTTCGTAGCTATTTGCATTTGAAGAAAGTCTTGCTTGTCCTTGATGATGTGTGGAATGATGATCCAAAAAAGTGGACAGGCTTGAAGGATTTGTTGAATTGCAGTTCCCATGGGAGTAAAATTGTGGTAACTACGCGTAAGAAAACTACTGCGGAAATTATGGGCACATTTCCACTGTACGAATTGAAAAGCCTTTCAGAAGATGAATGCATGTCCATATTTGTCAAATGTGCTTTTAAAGAAGGAGAAGAAAAAGAGTATCCAAAGCTTGTAGAGATTGGGAAGGCAATCGTGATGAAGTGTTGTGGACTTCCTCTTGCTATCAAAAGTCTAGGTGGCCTACTTTACACAAAGAGGGAGGAACGTGAATGGCTTTATATCAAAGATAAGGATATGTGGAAAATTGAGCAGAAAGAGAATGATGTTTTGCCCATATTAAAGTTGAGCTACGATGAACTGCCACTTCATCTAAAACAATGCTTTGCTTATTGTTCTATATTACCAAAGGATTGGCAAATAAGCAGCTTGAGTTTGATCCTTCAGTGGATGGCACATGGACTAATAAAATCATCTGATGAAAGCCGAGATTTAGAAGATACCGGTAAGCAGTATTTCCATGAGTTATTATCGAGGTCCTTTTTCCAAGATGCGGAAGTATCTTTCGACAATGCAATCATCTCAGTTAAAATGCATGATTTGGTGCATGATCTTGCACTAGCTGTGGCAGATAGAAACATTTCACACGTCAAATCGAAAACTCTAACCATTTACGAAGGAACTCGTCATCTGCTATTTTCTCCAGGAAAGTTGGAGGGCAAAGAGTTCCCTCATTTTCTACTCAAACTAAACAAGGTGCGGTCGGTTTCATTTGAGTTCCAAGTAGGTTGCATTAGCAAAACATTTCTTGAGACTCTTGTAAGGACCTTTAAGTGTTTACGCCTCCTGGACTTGTGTGGATCGGAGTTTGAAGAGTTCCCGAGTTCTTTCCGTACATTGAAACATCTAAGGTTTCTGAGCATTGCTCAAAATAATAACCTTAAAGCACTCCCTAACCCCATTTCTTACTTGGTGAATTTGCAAACCCTAAATCTTGAGGGTTGTGTGATGCTTCAAGATTTGCCTAGGGCCTTTGGTAATCTGTGGAGCCTTAGATGTTTAACTCTAACTTCACAAATGACATGTTTTCCGGAAAAGGGACTAGCAGAGGGCTTAAGCTCTCTTCGATATTTGTTGATTTCAAGGTGTTATCATCTTGAGTCATTATTGGATGGAATGCAAAACCTATCTTCTCTTCGTCATTTGTATATATCAAATTGCCCAAGTCTAATTTCTCTCCCAGCAAGAAGTATGAGGCATCTGACTTCCCTTGAGAAACTAGTGATTTGGAAATGTGAAAAGCTTAATATGTTTGAGGAAAAAGAAGACATGATGGAGCTGCCTAGCCTCTTCTCTCTAGTCCTTTTGGAGATCCCAACATTAAAGGAGTTGCCTCAAGGATTTGAAAAAGCTGCTTCAACTATAAAATACATTAGTATTAAAGATTGTCCTTCTTTTCAAATCATGCCCAAGTGGTTGAAGAAATGCGCATCCCTCTCAAAGCTCAAACTTGAAAATTGCATGCTTTTGGAATCTCTACCATTAGGGATGCATCAGCTTACTGCATTGAGAGAATTGCGTATTATAAACTGCTCAGAGAACCTGAGTACAAAATGCAAACGTGGAACAGGTGAATACTGGCCTTGGATATCTCACATTCCTAAGATTATCAATAGAATTCATGTGATATTTTCAAGTTCTGCTTTTCTTTTGATACTTCTTGTCAAAGCAGCATGGTTATCCTCCAAGCATGAAATTCTTGTTTCTTTAGAGGCTGAAATCCCTGGAGGACAAGGGAAAGAGTATCCGAAGCTGGTAGAGATTGGGAAGGCAATTATGAAGTGCGGTGGACTTCCTTTGGCTAAAGAGAATGACATTTTACCTATACTGAAGTTGAGTTATGATAAGATGCCACTCCATTTAAAGCAATGCTTTGCTTTTGGTCCCAAATTTCCAAAGGATTTTGGACTAACAACATTCCACTTGATCGAACAATGGATGGCAGATGGACTTCTACAATCATCTGATGGAAGCAGGCAATTAGAAGATACTGGGAGTAGGAATTTGCACGAGTTATTATCGAGGTCCTTTTTCCAAGTTGAGGAAATGTCTTTTGATGCTGAAAGTATGAGGTATCTGGCTTCCCTTAACCGACTAGAGATTGGCGATTTTGAGGATCTTAATTTGTTAGAAGAAGAAGATCACATGATGATGGAACTGCCAAGAGGCCTCGCCTCTATAAATTTTGGAGATGCCAACATTAAAGGAGTTGCCTCGTGGATTTGA

Network for GWHGAAZE018708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0003

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	12	97	3.10E-20
PF00931.23	NB-ARC	191	415	2.00E-42

Protein Sequence

>GWHPAAZE018719
MAESFVFEIAGQILGKLTTLAFREIGLIWGLKSEFKRLELTVSAIKAVLLDAAEQKKKSRHVEDWLEKLQEVLYDVDDLLDDFSTEYLRRKVVIKGSKWKKVSNFFLSSNSLTLRVTMSRKLKKIRSRLEDIDADRKKFEFVERVANSPGMYPLREQTHSFVHASDVIGRDLDKRTIVELLLSSGSSPTENISVLPIVGLGGLGKTTVAKFVYNDDAIVSNFKTRLWICVSEDFDLKKLIEKIMKDATGGVDHAHLDLNQLQACLRSYLHLKKVLLVLDDVWNDDPKKWTGLKDLLNCSSHGSKIVVTTRKKTTAEIMGTFPLYELKSLSEDECMSIFVKCAFKEGEEKEYPKLVEIGKAIVMKCCGLPLAIKSLGGLLYTKREEREWLYIKDKDMWKIEQKENDVLPILKLSYDELPLHLKQCFAYCSILPKDWQISSLSLILQWMAHGLIKSSDESRDLEDTGKQYFHELLSRSFFQDAEVSFDNAIISVKMHDLVHDLALAVADRNISHVKSKTLTIYEGTRHLLFSPGKLEGKEFPHFLLKLNKVRSVSFEFQVGCISKTFLETLVRTFKCLRLLDLCGSEFEEFPSSFRTLKHLRFLSIAQNNNLKALPNPISYLVNLQTLNLEGCVMLQDLPRAFGNLWSLRCLTLTSQMTCFPEKGLAEGLSSLRYLLISRCYHLESLLDGMQNLSSLRHLYISNCPSLISLPARSMRHLTSLEKLVIWKCEKLNMFEEKEDMMELPSLFSLVLLEIPTLKELPQGFEKAASTIKYISIKDCPSFQIMPKWLKKCASLSKLKLENCMLLESLPLGMHQLTALRELRIINCSENLSTKCKRGTGEYWPWISHIPKIINRIHVIFSSSAFLLILLVKAAWLSSKHEILVSLEAEIPGGQGKEYPKLVEIGKAIMKCGGLPLAKENDILPILKLSYDKMPLHLKQCFAFGPKFPKDFGLTTFHLIEQWMADGLLQSSDGSRQLEDTGSRNLHELLSRSFFQVEEMSFDAESMRYLASLNRLEIGDFEDLNLLEEEDHMMMELPRGLASINFGDANIKGVASWI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.306
	SRR3591706	second leaf	0.591
	SRR3591707	mature leaf	0.941
	SRR3591708	Shoot apex	0.900
	SRR3591709	Stem	1.154
	SRR3591710	White floral bud	0.619
	SRR3591711	White flower	1.419
	SRR3591712	Green floral bud	0.505
	SRR3591713	Yellow flower	0.987
SRP173429	SRR8316895	Juvenile bud stage	0.422
	SRR8316896	Juvenile bud stage	0.288
	SRR8316897	Juvenile bud stage	0.030
	SRR8316894	Third green stage	0.351
	SRR8316900	Third green stage	0.509
	SRR8316901	Third green stage	0.264
	SRR8316898	Complete white stage	0.216
	SRR8316899	Complete white stage	0.511
	SRR8316903	Complete white stage	0.463
	SRR8316902	Silver flowering stage	0.421
	SRR8316904	Silver flowering stage	0.543
	SRR8316905	Silver flowering stage	0.137
	SRR8316906	Gold flowering stage	0.743
	SRR8316907	Gold flowering stage	1.521
	SRR8316908	Gold flowering stage	0.657
SRP132670	SRR6706286	Control	0.142
	SRR6706287	Light intensity 50%	0.207
	SRR6706288	Light intensity 20%	0.146
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.337
	CNS0095593	Slightly white alabastrum(diploid) 2	0.143
	CNS0095594	Slightly white alabastrum(diploid) 3	0.184
	CNS0095595	Whole white alabastrum(diploid) 2	0.158
	CNS0095596	Whole white alabastrum(diploid) 3	0.318
	CNS0095597	Whole white alabastrum(diploid) 4	0.084
	CNS0095598	Silvery flower (diploied) 1	0.729
	CNS0095599	Silvery flower (diploied) 2	0.333
	CNS0095600	Silvery flower (diploied) 3	0.999
	CNS0095601	Golden flower (diploid) 1	0.276
	CNS0095602	Golden flower (diploid) 2	0.896
	CNS0095603	Golden flower (diploid) 3	0.857
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.765
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.429
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.396
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.405
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.322
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.765
	CNS0095610	Silvery flower (tetraploid) 1	1.440
	CNS0095611	Silvery flower (tetraploid) 2	1.798
	CNS0095612	Silvery flower (tetraploid) 3	2.231
	CNS0095613	Golden flower (tetraploid) 1	0.922
	CNS0095614	Golden flower (tetraploid) 2	1.746
	CNS0095615	Golden flower (tetraploid) 3	1.797
CRA001975	CRR073297	Stem 1	0.321
	CRR073298	Stem 2	0.357
	CRR073299	Stem 3	0.183
	CRR073300	Leaf 1	0.329
	CRR073301	Leaf 2	0.228
	CRR073302	Leaf 3	0.160
	CRR073303	Juvenile bud 1	0.182
	CRR073304	Juvenile bud 2	0.150
	CRR073305	Juvenile bud 3	0.224
	CRR073306	Third green 1	0.098
	CRR073307	Third green 2	0.080
	CRR073308	Third green 3	0.268
	CRR073309	Second white 1	0.250
	CRR073310	Second white 2	0.284
	CRR073311	Second white 3	0.451
	CRR073312	Silver flowering 1	0.318
	CRR073313	Silver flowering 2	0.131
	CRR073314	Silver flowering 3	0.078
	CRR073315	Gold flowering 1	0.382
	CRR073316	Gold flowering 2	0.763
	CRR073317	Gold flowering 3	0.118
	CRR073318	Tawny withering 1	0.233
	CRR073319	Tawny withering 2	0.066
	CRR073320	Tawny withering 3	0.106