Detail information of GWHGAAZE018733


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010094140.14.71752E-80Polyadenylate-binding protein 2 [Morus notabilis]
Swissprottr|Q9FJN9|PABN2_ARATH5E-67Polyadenylate-binding protein 2 {ECO:0000303|PubMed:18479511}
trEMBLtr|W9QVE2|W9QVE2_9ROSA2E-80Polyadenylate-binding protein 2 {ECO:0000313|EMBL:EXB55273.1}
TAIR10AT5G51120.21E-49polyadenylate-binding protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2352618523535908+
GWHAAZE00000005mRNA2352618523535908+
GWHAAZE00000005exon2352618523526208+
GWHAAZE00000005exon2352633423526442+
GWHAAZE00000005exon2352717623527219+
GWHAAZE00000005exon2352736323527498+
GWHAAZE00000005exon2352987923529949+
GWHAAZE00000005exon2353039023530462+
GWHAAZE00000005exon2353274123532796+
GWHAAZE00000005exon2353303723533228+
GWHAAZE00000005exon2353534223535502+
GWHAAZE00000005exon2353586023535908+
GWHAAZE00000005CDS2352618523526208+
GWHAAZE00000005CDS2352633423526442+
GWHAAZE00000005CDS2352717623527219+
GWHAAZE00000005CDS2352736323527498+
GWHAAZE00000005CDS2352987923529949+
GWHAAZE00000005CDS2353039023530462+
GWHAAZE00000005CDS2353274123532796+
GWHAAZE00000005CDS2353303723533228+
GWHAAZE00000005CDS2353534223535502+
GWHAAZE00000005CDS2353586023535908+
Transcript Sequence

Network for GWHGAAZE018733

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_11732352.10E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14396PABPN1, PABP2 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.009
SRR3591706second leaf9.185
SRR3591707mature leaf6.883
SRR3591708Shoot apex19.867
SRR3591709Stem27.635
SRR3591710White floral bud24.460
SRR3591711White flower20.090
SRR3591712Green floral bud19.310
SRR3591713Yellow flower21.933
SRP173429 SRR8316895Juvenile bud stage 24.920
SRR8316896Juvenile bud stage 40.987
SRR8316897Juvenile bud stage 12.834
SRR8316894Third green stage 13.211
SRR8316900Third green stage 29.096
SRR8316901Third green stage 35.586
SRR8316898Complete white stage 11.347
SRR8316899Complete white stage 22.882
SRR8316903Complete white stage 20.654
SRR8316902Silver flowering stage12.319
SRR8316904Silver flowering stage15.753
SRR8316905Silver flowering stage7.316
SRR8316906Gold flowering stage 25.409
SRR8316907Gold flowering stage 23.234
SRR8316908Gold flowering stage 22.967
SRP132670SRR6706286Control27.051
SRR6706287Light intensity 50%28.401
SRR6706288Light intensity 20%28.733
CNP0000432CNS0095592Slightly white alabastrum(diploid) 155.126
CNS0095593Slightly white alabastrum(diploid) 252.090
CNS0095594Slightly white alabastrum(diploid) 365.721
CNS0095595Whole white alabastrum(diploid) 246.186
CNS0095596Whole white alabastrum(diploid) 352.147
CNS0095597Whole white alabastrum(diploid) 441.299
CNS0095598Silvery flower (diploied) 125.198
CNS0095599Silvery flower (diploied) 225.699
CNS0095600Silvery flower (diploied) 317.105
CNS0095601Golden flower (diploid) 128.998
CNS0095602Golden flower (diploid) 219.062
CNS0095603Golden flower (diploid) 317.555
CNS0095604Slightly white alabastrum(tetraploid) 136.069
CNS0095605Slightly white alabastrum(tetraploid) 238.764
CNS0095606Slightly white alabastrum(tetraploid) 335.254
CNS0095607Whole white alabastrum(tetraploid) 127.487
CNS0095608Whole white alabastrum(tetraploid) 220.311
CNS0095609Whole white alabastrum(tetraploid) 324.698
CNS0095610Silvery flower (tetraploid) 119.488
CNS0095611Silvery flower (tetraploid) 214.831
CNS0095612Silvery flower (tetraploid) 334.051
CNS0095613Golden flower (tetraploid) 116.750
CNS0095614Golden flower (tetraploid) 218.982
CNS0095615Golden flower (tetraploid) 315.301
CRA001975CRR073297Stem 141.127
CRR073298Stem 237.003
CRR073299Stem 335.209
CRR073300Leaf 142.855
CRR073301Leaf 244.018
CRR073302Leaf 328.913
CRR073303Juvenile bud 128.984
CRR073304Juvenile bud 216.181
CRR073305Juvenile bud 315.608
CRR073306Third green 139.733
CRR073307Third green 238.779
CRR073308Third green 334.843
CRR073309Second white 115.171
CRR073310Second white 216.065
CRR073311Second white 312.772
CRR073312Silver flowering 16.377
CRR073313Silver flowering 26.982
CRR073314Silver flowering 39.296
CRR073315Gold flowering 110.990
CRR073316Gold flowering 214.046
CRR073317Gold flowering 37.501
CRR073318Tawny withering 128.400
CRR073319Tawny withering 231.059
CRR073320Tawny withering 332.526