Gene detail

Detail information of GWHGAAZE018751

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009613540.1	0	PREDICTED: uncharacterized protein LOC104106642 isoform X2 [Nicotiana tomentosiformis]
trEMBL	tr\|M1AXY6\|M1AXY6_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400032748}
TAIR10	AT4G33840.1	3E-162	Glycosyl hydrolase family 10 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	23849108	23852735	-
GWHAAZE00000005	mRNA	23849108	23852735	-
GWHAAZE00000005	exon	23849108	23849452	-
GWHAAZE00000005	exon	23849521	23849599	-
GWHAAZE00000005	exon	23849860	23850644	-
GWHAAZE00000005	exon	23851153	23851251	-
GWHAAZE00000005	exon	23851383	23851549	-
GWHAAZE00000005	exon	23851716	23851938	-
GWHAAZE00000005	exon	23852324	23852370	-
GWHAAZE00000005	exon	23852681	23852735	-
GWHAAZE00000005	CDS	23852681	23852735	-
GWHAAZE00000005	CDS	23852324	23852370	-
GWHAAZE00000005	CDS	23851716	23851938	-
GWHAAZE00000005	CDS	23851383	23851549	-
GWHAAZE00000005	CDS	23851153	23851251	-
GWHAAZE00000005	CDS	23849860	23850644	-
GWHAAZE00000005	CDS	23849521	23849599	-
GWHAAZE00000005	CDS	23849108	23849452	-

Transcript Sequence
>GWHTAAZE018773 ATGAAGGTTTTCAAAACGGAATTTTTCATAATGCTATGTGCTGTAATTTTAGCAGGATATGAGACTGAGGCTTCAACTTACAACTACTCAGCAAGCATTGAGTGTTTGCCCAATCCTCTGGCTCCTCAATATGAAGGAGGATTAGTGGCTAATCCTAAATTTGACAAAGGCTTGGAAGGATGGGGTGTGTTTGGACACGGAACAATTGAAGTTAGAAAATCCAGGGTGGGAAACCAATTCATTGTAGCCAAACATAGAACTCAGCCACATGATAGTTTTTCACAATGGCTTCATCTACAAGAAGGCAATTATTACACGTTCTCAGCTTGGGTGCAAATTAATGAAGGAAAGGAGACAGTGGTTGCTGCATTTAGAAATTTTCATGACCAAAAAATGGTGGTGGGTTCAATTATAGCTCAATATGGTTGCTGGTCCATGCTTAAAGGAGGATTTTCAGCTGATCAAACCATGTCATTTGAGCTCTATTTTGAGAGTAACAATACCGATATTGAGCTGTGGGTAGATAATATTTCTCTACAGCCATTTACTAAAAGTCAATGGACAGAGCATCAATTTCAAAGCATAGAGAAGGTAAGAAAGAGGAAACTAGTTTTACATGTAACCAACAAGCAAGGAAAGAAGCTCCAAGGTGCAAAAATCACCATCAAACAAACAAAGCCCTATTTCCCCCTGGGCTGTGCCACAGCTGAAACCATACTAGAAAACAAATCTTACCAAAAATGGTTCACCTCTCGCTTCCCCGCCACCACTTTTGACAACGAAATGAAATGGTACTTCACTGAAAAAACCCGAGGCCACGAAAACTACACTACCGCAGACGCCATGTTAGCCTTTTTTAAACGCCACGGTATCTCGGTAAGAGGCCACAATATTTTTTGGGACAACCCAATGGAAAACTTGCCATGGGTCAGGTCCCTATCCCCTGAAGAACTTGTGGACGCTTCTGTCAGCCGAATTGTTTCTCTAATGTTGCGATACGCGGGCAAAGTAATAGCGTGGGACGTGATGAATGAGAACTTGCACTTCTCCTTCTTTGAAGATAGACTCGGGGAAAACGCTTCCTCAATTTTATATAGCTTTGCACAAGAATTGGATCCTGTAACAACTATGTTTATGAATGAGTACAATACTTTGGAGTATCCTGAGGATCTTAGGGCCACACCATCTAAGTATATAGAGAAGATAAAGGAGATTAGGGGGTATAAGGAAACTGAGATAAAGGTTGTGGGGATTGGACTTCAAGGTCATTTTGGAAAGCCCAATATACCTTATGTACGTGCATGTTTGGATGTTCTTGGTACAACTAATATGCCCATATGGCTCACAGAGTTGGATGTTAAAAAGGACCACATCAACATTCTCAAACTTTCACAACTGCAAGCCTCTTTTTGCTTCTTCACCATGGCTCAAAACGGTAGATGCTCTTATGTCCTTGCTGAATACTTGGAAGAAATTATGAGAGAGGCCTATTCCCATCCCGCAGTTCAAGGAATTATAGTGTGGTCAGGGTGGAAGCCAACAGGATGTAGTAACATGTGCTTAACAGACAACAATTTCGAGAGTTTGCCAACCGGAGATGTGGTTGACAAGTTGCTCCGGGAATGGAAGACGGAAAACTTGAAGGGAATTACAAATGAAATTGGAGTTTATGAGCACCAAGTTTTTCATGGGGATTATTTTGTGACAGTCTTTGATCCTTATACTAGAAAAAAAATAACAAGGAAGTTGAAGGTGACCAAAGAGAATACTGAAGCACTCAATGTTTGGATACGTATATGA

Network for GWHGAAZE018751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02018.18	CBM_4_9	48	165	5.30E-09
PF00331.21	Glyco_hydro_10	225	509	4.00E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.920
	SRR3591706	second leaf	1.356
	SRR3591707	mature leaf	1.465
	SRR3591708	Shoot apex	0.451
	SRR3591709	Stem	2.412
	SRR3591710	White floral bud	5.040
	SRR3591711	White flower	3.441
	SRR3591712	Green floral bud	0.203
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	14.071
	SRR8316896	Juvenile bud stage	2.171
	SRR8316897	Juvenile bud stage	1.557
	SRR8316894	Third green stage	7.133
	SRR8316900	Third green stage	3.330
	SRR8316901	Third green stage	2.624
	SRR8316898	Complete white stage	0.364
	SRR8316899	Complete white stage	27.401
	SRR8316903	Complete white stage	8.421
	SRR8316902	Silver flowering stage	0.032
	SRR8316904	Silver flowering stage	0.076
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	3.694
	SRR6706287	Light intensity 50%	3.925
	SRR6706288	Light intensity 20%	3.435
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.691
	CNS0095593	Slightly white alabastrum(diploid) 2	5.530
	CNS0095594	Slightly white alabastrum(diploid) 3	5.546
	CNS0095595	Whole white alabastrum(diploid) 2	8.162
	CNS0095596	Whole white alabastrum(diploid) 3	1.051
	CNS0095597	Whole white alabastrum(diploid) 4	4.356
	CNS0095598	Silvery flower (diploied) 1	29.503
	CNS0095599	Silvery flower (diploied) 2	18.186
	CNS0095600	Silvery flower (diploied) 3	9.595
	CNS0095601	Golden flower (diploid) 1	25.274
	CNS0095602	Golden flower (diploid) 2	19.524
	CNS0095603	Golden flower (diploid) 3	18.300
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.867
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.754
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.267
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.715
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.207
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.163
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	12.987
	CNS0095612	Silvery flower (tetraploid) 3	2.022
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.051
CRA001975	CRR073297	Stem 1	4.431
	CRR073298	Stem 2	3.516
	CRR073299	Stem 3	4.046
	CRR073300	Leaf 1	2.490
	CRR073301	Leaf 2	1.241
	CRR073302	Leaf 3	1.408
	CRR073303	Juvenile bud 1	0.875
	CRR073304	Juvenile bud 2	0.405
	CRR073305	Juvenile bud 3	2.518
	CRR073306	Third green 1	0.046
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.022
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.962
	CRR073316	Gold flowering 2	4.447
	CRR073317	Gold flowering 3	2.500
	CRR073318	Tawny withering 1	0.044
	CRR073319	Tawny withering 2	0.029
	CRR073320	Tawny withering 3	0.067