Gene detail

Detail information of GWHGAAZE018764

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264923.1	0	PREDICTED: uncharacterized protein LOC100257088 isoform X2 [Vitis vinifera]
trEMBL	tr\|F6HJL9\|F6HJL9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52769.1}
TAIR10	AT5G64170.1	2E-39	dentin sialophosphoprotein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24031067	24038758	+
GWHAAZE00000005	mRNA	24031067	24038758	+
GWHAAZE00000005	exon	24031067	24031189	+
GWHAAZE00000005	exon	24032977	24033512	+
GWHAAZE00000005	exon	24033602	24033947	+
GWHAAZE00000005	exon	24034096	24034794	+
GWHAAZE00000005	exon	24035977	24036125	+
GWHAAZE00000005	exon	24038238	24038355	+
GWHAAZE00000005	exon	24038666	24038758	+
GWHAAZE00000005	five_prime_UTR	24031067	24031165	+
GWHAAZE00000005	CDS	24031166	24031189	+
GWHAAZE00000005	CDS	24032977	24033512	+
GWHAAZE00000005	CDS	24033602	24033947	+
GWHAAZE00000005	CDS	24034096	24034794	+
GWHAAZE00000005	CDS	24035977	24036125	+
GWHAAZE00000005	CDS	24038238	24038355	+
GWHAAZE00000005	CDS	24038666	24038758	+

Transcript Sequence
>GWHTAAZE018786 CTTTTCATTGATTCCATGGTCTAGGGAGAAATTTTGTCTTCTATATGGCACCAAATCCAACGATTTCATATAATTTGAGTGCTGGGTAGAAGTGAAGGAATGTCAGACTTGTCAATGTATCAGCTTGAAGATATTGTCTGGGATGATTTCAGTCAAAGTGATGATCACATAGTGCCTCATCCTAGGGATACAAATTCCAACGAGCAATCATTTCAGGGTGAAAACCGTAAGAGACCTAGACGCAAGGAAAAGGAAGAAAGAGACTCTACAACAAATAAAAGAAGGAACACAATGTTGGAAAACGTTCCATGGTCCGACATAGCTGATGGTGGTATGTTTTCTTCTTCATGTGATAGTGACCCAATGGAAGGAGTGGAAAATTTTGCATCTGATGATCCGAAGATGCCAAGTCAATGCTTCAAAAACAGCAACATAGACTCGATTGGTGACAGTGAGTTATGTGCAGATAATCGTATCCTCAGTGACAAGTGCACAGAGATTGATAGCAACTCATATTCTTACCCTCTAAGTAACATCTCTCAATCACAGAATGATCTCGGCTTTTTAGATAACAATCAGGACGACAAAGAATCTAACGATCTCTTATACTATGGTTGGCCTGATATAGAAAATTTCGAGGATGTTGACAGAATGTTTAGAAGTTGTGATTCATCATTTGGACTTGGGGGTGCTGGTAATGAAGATGAACTAGGTTGGTTTTCATCATCAGATGCTATTGAAGGATCTGAAGATGTATTGAAGTCAGACTTGAAGTTTTCATGCCCCGAGGCAAATGCAATGAAAAATGGCAGTCAAGAGGCTTCAAATGTGAGTAATGAAAGTTCTTCAATCAATGACTCGAGGACAAGAAGTGCATTGGGTAGCTGTAATGCTAGTTCTTGGCCATCGGAAATTGATGAACCCACCACACTGAGCCACTTGTCTTTTGCAACTGGGTCCAATCAAAGTTCTGAAAGCAAGGATAACTTTATGCCTAAAGACCAGATCCATTTGCATAAAAAGCAGCAAAAGCACCAGTGTCTTAGAGAAGAAAAAGCACAAGACCACTGCTTGGAAAATGGTGGTTCATTTCATCACAAGGGAAACCTGAAAGACAGAGACATACATATTCCGTCCGGGGATAAAGCACATCAACTTTTCACCTCTGAAGGCATTCGGCCACAAAAACAAAACCTGGGACCCAATTCCTTCAGTTACCTGCAGACTAGTACTCCTTATATGCATATAGACTTCTCTCCTCCTTCAGATCAAACTAAGGTTGGTCCAAAGCTATCTGGTGTCAAATCAGAAAATAAGGGTTTCACATCTTCCTATGCATCAAATCAGGTGCAGTCGGTGGATCGCTCTCATGATCCTTCCTTTGATACAAACACTATCAAACTTGGTGAAGAGAGAGAAAAGTTACACGCCCAACAGGGGTTTCAACCTTCATTAACCAGCAATCCGAAACATATGGTTTTGATGGGTCAATCTCCAATCTGCGATCCAGTTTCAGTTATGAAGGAAGTCCATAAATATGGTAATGGACCGAGAAATCAGAGTGATACTGAAGGAGTTAACTTAGGAATTCTCGCAGAATTAGGTTCTTCAGATGTTAAGGATAGCTCTTCTATGAATTCTAAGTTGGATGAAATCTCACAAGAAGCAAATAGTTTCCATCAGCTTCAGCAAGTCATGGAACAGTTGGATTTGAGGACAAAACTGTGCATAAGGGATAGTCTGTACCGTTTGGCTAGGAGTGCTGAACAACGACATAACTATGCAAATCTGAATGGTGGCAGCAGTGACGATACAGATAGCAGTGGAACATTTATAGCTGAAGGAACAAATAATTGTGCTGGATTTATGGATATGGAGACTGATACAAATCCAATAGATCGATCTGTAGCTCACTTATTGTTCCACAGGCCCCCAGACTCATCTGTTACATCTCTCAAGTCGCATACCATGATTCACGGGCCTGTAGGTAATCAGCCATTGATGGCCGAAAAGATCATTGGCCGTGAAGAAAGTGTGGCTAAAACAGATAGAAGAGATGATTAA

Network for GWHGAAZE018764

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0156

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.782
	SRR3591706	second leaf	73.528
	SRR3591707	mature leaf	144.673
	SRR3591708	Shoot apex	57.887
	SRR3591709	Stem	68.004
	SRR3591710	White floral bud	55.000
	SRR3591711	White flower	59.030
	SRR3591712	Green floral bud	43.459
	SRR3591713	Yellow flower	49.951
SRP173429	SRR8316895	Juvenile bud stage	25.065
	SRR8316896	Juvenile bud stage	35.995
	SRR8316897	Juvenile bud stage	16.991
	SRR8316894	Third green stage	14.699
	SRR8316900	Third green stage	32.907
	SRR8316901	Third green stage	33.555
	SRR8316898	Complete white stage	26.771
	SRR8316899	Complete white stage	62.514
	SRR8316903	Complete white stage	39.224
	SRR8316902	Silver flowering stage	28.414
	SRR8316904	Silver flowering stage	42.807
	SRR8316905	Silver flowering stage	21.483
	SRR8316906	Gold flowering stage	89.864
	SRR8316907	Gold flowering stage	68.397
	SRR8316908	Gold flowering stage	72.803
SRP132670	SRR6706286	Control	17.462
	SRR6706287	Light intensity 50%	20.886
	SRR6706288	Light intensity 20%	21.905
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.387
	CNS0095593	Slightly white alabastrum(diploid) 2	20.171
	CNS0095594	Slightly white alabastrum(diploid) 3	18.207
	CNS0095595	Whole white alabastrum(diploid) 2	18.913
	CNS0095596	Whole white alabastrum(diploid) 3	18.250
	CNS0095597	Whole white alabastrum(diploid) 4	17.724
	CNS0095598	Silvery flower (diploied) 1	34.252
	CNS0095599	Silvery flower (diploied) 2	41.629
	CNS0095600	Silvery flower (diploied) 3	54.556
	CNS0095601	Golden flower (diploid) 1	56.291
	CNS0095602	Golden flower (diploid) 2	68.969
	CNS0095603	Golden flower (diploid) 3	64.213
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.213
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.516
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.038
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.704
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.737
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.272
	CNS0095610	Silvery flower (tetraploid) 1	40.277
	CNS0095611	Silvery flower (tetraploid) 2	40.397
	CNS0095612	Silvery flower (tetraploid) 3	1.689
	CNS0095613	Golden flower (tetraploid) 1	20.422
	CNS0095614	Golden flower (tetraploid) 2	41.686
	CNS0095615	Golden flower (tetraploid) 3	91.308
CRA001975	CRR073297	Stem 1	2.005
	CRR073298	Stem 2	1.534
	CRR073299	Stem 3	1.829
	CRR073300	Leaf 1	2.440
	CRR073301	Leaf 2	2.297
	CRR073302	Leaf 3	2.154
	CRR073303	Juvenile bud 1	2.132
	CRR073304	Juvenile bud 2	2.627
	CRR073305	Juvenile bud 3	2.147
	CRR073306	Third green 1	0.035
	CRR073307	Third green 2	0.194
	CRR073308	Third green 3	0.222
	CRR073309	Second white 1	0.016
	CRR073310	Second white 2	0.320
	CRR073311	Second white 3	0.166
	CRR073312	Silver flowering 1	0.205
	CRR073313	Silver flowering 2	0.741
	CRR073314	Silver flowering 3	0.074
	CRR073315	Gold flowering 1	0.999
	CRR073316	Gold flowering 2	1.309
	CRR073317	Gold flowering 3	0.860
	CRR073318	Tawny withering 1	0.837
	CRR073319	Tawny withering 2	0.310
	CRR073320	Tawny withering 3	1.696