Gene detail

Detail information of GWHGAAZE018774

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADL60215.1	1.1934E-118	beta-hydroxyacyl-ACP dehydratase [Helianthus annuus]
trEMBL	tr\|F2VYC9\|F2VYC9_HELAN	4E-119	Beta-hydroxyacyl-ACP dehydratase {ECO:0000313\|EMBL:ADL60215.1}
TAIR10	AT5G10160.1	2E-87	Thioesterase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24138831	24142703	+
GWHAAZE00000005	mRNA	24138831	24142703	+
GWHAAZE00000005	exon	24138831	24139109	+
GWHAAZE00000005	exon	24139199	24139259	+
GWHAAZE00000005	exon	24139615	24139759	+
GWHAAZE00000005	exon	24142224	24142703	+
GWHAAZE00000005	five_prime_UTR	24138831	24138877	+
GWHAAZE00000005	CDS	24138878	24139109	+
GWHAAZE00000005	CDS	24139199	24139259	+
GWHAAZE00000005	CDS	24139615	24139759	+
GWHAAZE00000005	CDS	24142224	24142478	+
GWHAAZE00000005	three_prime_UTR	24142479	24142703	+

Transcript Sequence
>GWHTAAZE018796 GTTATCATTGTCTCCGAAATTCTCCCCCTTTCTTTCCCCACTCTGCAATGGCTTCCGCATCTCTCTCTCATCCTGTTTCATCATCATCCCCTCTCAATTCAAACTCACCCCTCACTCGCCGGACCCTTCACAATGTCTCTTCTCTTCGCCAACTCGTGGGTATCTCCAGATCCCCTCTTCTTTCCACCCAATTGAAGATGAACAACAAATCTAATTTGATTACTAACTGTACCCCAACTGGTGGGAAAGAAACTGCAGAAGAAATCCCCATTGAATTGAGGTACCCAGCATTTCCCACTGTGATGGATATCAATCAGATTCGTGAGATTTTACCCCACCGGTTCCCATTTCTTCTAGTGGATAGAGTGATTGAATACAATGCTGGGGTTTCAGCCGTGGCCATCAAGAACGTGACAATAAATGACAACTTCTTCCCAGGTCACTTTCCTGAGAGGCCAATCATGCCTGGTGTGCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGTGGCTCCCGTGACAATTTCTTCTTTGCCGGGATCGACAAAGTGAGGTTCCGAAAACCGGTGATCGCTGGAGACACCTTAGTAATGAAAATGACTCTTATCAAACTGCAGAAACGTTTTGGAATTGCAAAGATGGAGGGAAAGGCATACGTAGGAGGTGAAGTCGTATGTGAAGGTGAATTCTTAATGGCTATGGGGAGTAGTGAATGATCATAATTATTCGACAGTTCATAGTAATTGTTGATTTTCTATCTCATCAGTTTCTTTCCCTGAATTGCGGCTGCATTTTAGTTTGTTTGTGTCGGAACTAATTGAGTATTATTTTCTCTCGGTCATAATTTATATTTTCATTAGATGCTACTTGCCGTATTAGCATTTGTTGTTGGTTATGTTGGTGTTACAATATTTTCAATGGAAGTAGCTTTTAGTTAATAA

Network for GWHGAAZE018774

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07977.14	FabA	95	220	1.80E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02372	fabZ	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016836	molecular_function	hydro-lyase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.843
	SRR3591706	second leaf	50.158
	SRR3591707	mature leaf	10.336
	SRR3591708	Shoot apex	91.887
	SRR3591709	Stem	18.490
	SRR3591710	White floral bud	48.240
	SRR3591711	White flower	33.501
	SRR3591712	Green floral bud	125.857
	SRR3591713	Yellow flower	19.576
SRP173429	SRR8316895	Juvenile bud stage	59.041
	SRR8316896	Juvenile bud stage	87.255
	SRR8316897	Juvenile bud stage	43.420
	SRR8316894	Third green stage	33.603
	SRR8316900	Third green stage	149.305
	SRR8316901	Third green stage	122.513
	SRR8316898	Complete white stage	19.170
	SRR8316899	Complete white stage	60.206
	SRR8316903	Complete white stage	24.934
	SRR8316902	Silver flowering stage	18.364
	SRR8316904	Silver flowering stage	18.702
	SRR8316905	Silver flowering stage	10.136
	SRR8316906	Gold flowering stage	24.090
	SRR8316907	Gold flowering stage	28.620
	SRR8316908	Gold flowering stage	29.076
SRP132670	SRR6706286	Control	66.305
	SRR6706287	Light intensity 50%	70.857
	SRR6706288	Light intensity 20%	82.118
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	102.023
	CNS0095593	Slightly white alabastrum(diploid) 2	92.471
	CNS0095594	Slightly white alabastrum(diploid) 3	83.928
	CNS0095595	Whole white alabastrum(diploid) 2	89.026
	CNS0095596	Whole white alabastrum(diploid) 3	103.118
	CNS0095597	Whole white alabastrum(diploid) 4	75.439
	CNS0095598	Silvery flower (diploied) 1	29.115
	CNS0095599	Silvery flower (diploied) 2	29.667
	CNS0095600	Silvery flower (diploied) 3	36.086
	CNS0095601	Golden flower (diploid) 1	14.191
	CNS0095602	Golden flower (diploid) 2	20.904
	CNS0095603	Golden flower (diploid) 3	23.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	112.026
	CNS0095605	Slightly white alabastrum(tetraploid) 2	103.887
	CNS0095606	Slightly white alabastrum(tetraploid) 3	102.633
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	70.975
	CNS0095609	Whole white alabastrum(tetraploid) 3	126.798
	CNS0095610	Silvery flower (tetraploid) 1	41.811
	CNS0095611	Silvery flower (tetraploid) 2	39.264
	CNS0095612	Silvery flower (tetraploid) 3	41.712
	CNS0095613	Golden flower (tetraploid) 1	27.492
	CNS0095614	Golden flower (tetraploid) 2	33.219
	CNS0095615	Golden flower (tetraploid) 3	13.511
CRA001975	CRR073297	Stem 1	96.570
	CRR073298	Stem 2	99.638
	CRR073299	Stem 3	92.350
	CRR073300	Leaf 1	120.931
	CRR073301	Leaf 2	116.903
	CRR073302	Leaf 3	154.336
	CRR073303	Juvenile bud 1	131.587
	CRR073304	Juvenile bud 2	122.090
	CRR073305	Juvenile bud 3	111.421
	CRR073306	Third green 1	44.871
	CRR073307	Third green 2	25.016
	CRR073308	Third green 3	37.090
	CRR073309	Second white 1	34.398
	CRR073310	Second white 2	16.834
	CRR073311	Second white 3	17.359
	CRR073312	Silver flowering 1	22.195
	CRR073313	Silver flowering 2	33.171
	CRR073314	Silver flowering 3	17.301
	CRR073315	Gold flowering 1	34.290
	CRR073316	Gold flowering 2	42.300
	CRR073317	Gold flowering 3	39.338
	CRR073318	Tawny withering 1	69.589
	CRR073319	Tawny withering 2	42.385
	CRR073320	Tawny withering 3	84.019