Gene detail

Detail information of GWHGAAZE018778

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087845.1	2.1554E-125	PREDICTED: F-box/kelch-repeat protein At1g22040 [Sesamum indicum]
Swissprot	tr\|Q9LM55\|FBK8_ARATH	2E-88	F-box/kelch-repeat protein At1g22040
trEMBL	tr\|A0A068TMA7\|A0A068TMA7_COFCA	6E-122	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97475.1}
TAIR10	AT1G22040.1	3E-69	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24188384	24189115	+
GWHAAZE00000005	mRNA	24188384	24189115	+
GWHAAZE00000005	exon	24188384	24189115	+
GWHAAZE00000005	CDS	24188384	24189115	+

Transcript Sequence
>GWHTAAZE018800 ATGGGGGCTATATTGAGCCTGAGCAACCCTAAGGTCAGAAACAGCGAGCTCCTTGAAGTCTCACAGGGTGAAGCCAATAAGAGGCAAAGGACATCGTCAAGCATTTGGGATGAAAACCCACGATTAATTCCCTGCCTTCCTGATGAGATATCAATTCAGATTCTTGCTAGGCTTCCTAGAGTTTGCTATTTGGATGCCAAATCGGTATCAAGGAGCTGGAAAGCTTCTATAATGAGCCCCGAACTTTATAAACTAAGAAAAGAACTTGGAACAACAGAGGAGTGGCTCTACATTTTGACCAAGAGCGGAGGTGATAAACTTTTGTGGTACGCTTTGGACCCACTGTCCAAAACGTGGCAAAAGTTGCCTCCGATGCCCAATGTTTCTGTAGAAGATGGATCTAGAAGGGGCTTATCTGGCCTTCGGATGTGGAATATGGTTGGATCGAGTATCAAAATTGCAGATGCCATACGTGGTTGGCTTGGAAGGAGGGACACATTGGATCGCATCCCGTTTTGCGGCTGTGCAATCAGTGCTGTTGATGGCTGCCTGTACGTGCTGGGGGGATTCTCTAGAGCTTCGGCCATGAGTTGTGTGTGGCGGTACGATCCAATTCTAAATAGGTGGAGCGAAGTGAGTCCAATGTCTGTCGGTAGGGCTTATTGTAAGACAGGAGTCCTAAACAAGAAGCTTTTTGTTGTTGGGGTGTTAGTAGGGGTCGTGGTGGACTAA

Network for GWHGAAZE018778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	43	84	2.90E-06
PF01344.26	Kelch_1	171	216	3.00E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.232
	SRR3591706	second leaf	17.782
	SRR3591707	mature leaf	27.150
	SRR3591708	Shoot apex	21.506
	SRR3591709	Stem	36.340
	SRR3591710	White floral bud	39.279
	SRR3591711	White flower	51.030
	SRR3591712	Green floral bud	27.379
	SRR3591713	Yellow flower	46.931
SRP173429	SRR8316895	Juvenile bud stage	13.800
	SRR8316896	Juvenile bud stage	16.602
	SRR8316897	Juvenile bud stage	6.414
	SRR8316894	Third green stage	7.092
	SRR8316900	Third green stage	21.169
	SRR8316901	Third green stage	23.943
	SRR8316898	Complete white stage	13.824
	SRR8316899	Complete white stage	48.623
	SRR8316903	Complete white stage	29.605
	SRR8316902	Silver flowering stage	12.403
	SRR8316904	Silver flowering stage	18.635
	SRR8316905	Silver flowering stage	11.098
	SRR8316906	Gold flowering stage	39.667
	SRR8316907	Gold flowering stage	30.119
	SRR8316908	Gold flowering stage	45.458
SRP132670	SRR6706286	Control	40.832
	SRR6706287	Light intensity 50%	42.339
	SRR6706288	Light intensity 20%	45.222
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.380
	CNS0095593	Slightly white alabastrum(diploid) 2	10.521
	CNS0095594	Slightly white alabastrum(diploid) 3	12.477
	CNS0095595	Whole white alabastrum(diploid) 2	11.832
	CNS0095596	Whole white alabastrum(diploid) 3	8.580
	CNS0095597	Whole white alabastrum(diploid) 4	12.884
	CNS0095598	Silvery flower (diploied) 1	15.045
	CNS0095599	Silvery flower (diploied) 2	12.951
	CNS0095600	Silvery flower (diploied) 3	35.412
	CNS0095601	Golden flower (diploid) 1	16.287
	CNS0095602	Golden flower (diploid) 2	36.847
	CNS0095603	Golden flower (diploid) 3	35.104
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.547
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.589
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.173
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.415
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.216
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.538
	CNS0095610	Silvery flower (tetraploid) 1	28.576
	CNS0095611	Silvery flower (tetraploid) 2	34.471
	CNS0095612	Silvery flower (tetraploid) 3	49.001
	CNS0095613	Golden flower (tetraploid) 1	19.130
	CNS0095614	Golden flower (tetraploid) 2	30.677
	CNS0095615	Golden flower (tetraploid) 3	40.697
CRA001975	CRR073297	Stem 1	24.839
	CRR073298	Stem 2	25.555
	CRR073299	Stem 3	29.971
	CRR073300	Leaf 1	31.649
	CRR073301	Leaf 2	27.500
	CRR073302	Leaf 3	21.645
	CRR073303	Juvenile bud 1	25.694
	CRR073304	Juvenile bud 2	30.217
	CRR073305	Juvenile bud 3	39.257
	CRR073306	Third green 1	38.096
	CRR073307	Third green 2	29.299
	CRR073308	Third green 3	32.582
	CRR073309	Second white 1	30.773
	CRR073310	Second white 2	30.044
	CRR073311	Second white 3	28.751
	CRR073312	Silver flowering 1	32.874
	CRR073313	Silver flowering 2	31.460
	CRR073314	Silver flowering 3	28.518
	CRR073315	Gold flowering 1	17.131
	CRR073316	Gold flowering 2	24.534
	CRR073317	Gold flowering 3	25.704
	CRR073318	Tawny withering 1	25.802
	CRR073319	Tawny withering 2	17.023
	CRR073320	Tawny withering 3	14.593