Detail information of GWHGAAZE018779


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004230575.13.9115E-113PREDICTED: F-box/kelch-repeat protein At1g22040 [Solanum lycopersicum]
Swissprottr|Q9LM55|FBK8_ARATH5E-92F-box/kelch-repeat protein At1g22040
trEMBLtr|K4B270|K4B270_SOLLC1E-113Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g104980.2.1}
TAIR10AT1G22040.12E-76Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2418917824189816+
GWHAAZE00000005mRNA2418917824189816+
GWHAAZE00000005exon2418917824189816+
GWHAAZE00000005CDS2418917824189816+
Transcript Sequence

Network for GWHGAAZE018779

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0049


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.752
SRR3591706second leaf15.658
SRR3591707mature leaf30.399
SRR3591708Shoot apex23.273
SRR3591709Stem43.022
SRR3591710White floral bud36.036
SRR3591711White flower45.248
SRR3591712Green floral bud38.193
SRR3591713Yellow flower49.585
SRP173429 SRR8316895Juvenile bud stage 17.058
SRR8316896Juvenile bud stage 20.815
SRR8316897Juvenile bud stage 9.502
SRR8316894Third green stage 7.540
SRR8316900Third green stage 23.458
SRR8316901Third green stage 25.267
SRR8316898Complete white stage 17.114
SRR8316899Complete white stage 49.244
SRR8316903Complete white stage 22.756
SRR8316902Silver flowering stage14.669
SRR8316904Silver flowering stage19.485
SRR8316905Silver flowering stage8.673
SRR8316906Gold flowering stage 37.104
SRR8316907Gold flowering stage 36.366
SRR8316908Gold flowering stage 47.155
SRP132670SRR6706286Control29.640
SRR6706287Light intensity 50%30.296
SRR6706288Light intensity 20%32.037
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.845
CNS0095593Slightly white alabastrum(diploid) 222.039
CNS0095594Slightly white alabastrum(diploid) 320.515
CNS0095595Whole white alabastrum(diploid) 220.505
CNS0095596Whole white alabastrum(diploid) 318.001
CNS0095597Whole white alabastrum(diploid) 419.270
CNS0095598Silvery flower (diploied) 124.219
CNS0095599Silvery flower (diploied) 220.994
CNS0095600Silvery flower (diploied) 334.470
CNS0095601Golden flower (diploid) 125.229
CNS0095602Golden flower (diploid) 237.598
CNS0095603Golden flower (diploid) 337.209
CNS0095604Slightly white alabastrum(tetraploid) 128.785
CNS0095605Slightly white alabastrum(tetraploid) 221.800
CNS0095606Slightly white alabastrum(tetraploid) 332.402
CNS0095607Whole white alabastrum(tetraploid) 119.921
CNS0095608Whole white alabastrum(tetraploid) 219.719
CNS0095609Whole white alabastrum(tetraploid) 324.428
CNS0095610Silvery flower (tetraploid) 129.699
CNS0095611Silvery flower (tetraploid) 234.100
CNS0095612Silvery flower (tetraploid) 349.616
CNS0095613Golden flower (tetraploid) 126.886
CNS0095614Golden flower (tetraploid) 234.886
CNS0095615Golden flower (tetraploid) 339.458
CRA001975CRR073297Stem 138.548
CRR073298Stem 242.999
CRR073299Stem 344.937
CRR073300Leaf 149.557
CRR073301Leaf 248.631
CRR073302Leaf 349.656
CRR073303Juvenile bud 156.137
CRR073304Juvenile bud 252.878
CRR073305Juvenile bud 354.686
CRR073306Third green 157.698
CRR073307Third green 250.810
CRR073308Third green 349.896
CRR073309Second white 162.601
CRR073310Second white 258.552
CRR073311Second white 351.259
CRR073312Silver flowering 154.341
CRR073313Silver flowering 276.759
CRR073314Silver flowering 355.501
CRR073315Gold flowering 134.180
CRR073316Gold flowering 238.176
CRR073317Gold flowering 334.473
CRR073318Tawny withering 156.868
CRR073319Tawny withering 260.677
CRR073320Tawny withering 344.855