Gene detail

Detail information of GWHGAAZE018781

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97477.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q38942\|RAE1_ARATH	3E-178	Protein RAE1 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A068TN79\|A0A068TN79_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97477.1}
TAIR10	AT1G80670.1	2E-142	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24250420	24256760	+
GWHAAZE00000005	mRNA	24250420	24256760	+
GWHAAZE00000005	exon	24250420	24250536	+
GWHAAZE00000005	exon	24250910	24250996	+
GWHAAZE00000005	exon	24252020	24252097	+
GWHAAZE00000005	exon	24252195	24252388	+
GWHAAZE00000005	exon	24252558	24252699	+
GWHAAZE00000005	exon	24252826	24252869	+
GWHAAZE00000005	exon	24254336	24254462	+
GWHAAZE00000005	exon	24254596	24254673	+
GWHAAZE00000005	exon	24255326	24255397	+
GWHAAZE00000005	exon	24256507	24256587	+
GWHAAZE00000005	exon	24256716	24256760	+
GWHAAZE00000005	five_prime_UTR	24250420	24250488	+
GWHAAZE00000005	CDS	24250489	24250536	+
GWHAAZE00000005	CDS	24250910	24250996	+
GWHAAZE00000005	CDS	24252020	24252097	+
GWHAAZE00000005	CDS	24252195	24252388	+
GWHAAZE00000005	CDS	24252558	24252699	+
GWHAAZE00000005	CDS	24252826	24252869	+
GWHAAZE00000005	CDS	24254336	24254462	+
GWHAAZE00000005	CDS	24254596	24254673	+
GWHAAZE00000005	CDS	24255326	24255397	+
GWHAAZE00000005	CDS	24256507	24256587	+
GWHAAZE00000005	CDS	24256716	24256760	+

Transcript Sequence
>GWHTAAZE018803 TTCCCATCCTAATTTCGCCTATTCATAAATTCTCTGGTAAAATTTAGATCATAGGCAGCTCCAAATTCAATGTCTACCTGCGGAAGTGTGAATACAAATCCGAACAAGTCTACTGAGGTGACACAGTCTCCAAGTGATTGTGTATCCAGTCTAACTTTTAGTCCCAAGGCCAATTTCCTTGTTGCGACTTCGTGGGATAACCAGGTACGGTGTTGGGAGGTAATGAGGAGTGGGACCTCTGTTGGCAGTGCACCCAAGGCATCAATATCACATGACCATCCGGTCTTGTGCTCAACTTGGAAGGACGATGGAACCACAGTTTTCTCTGGAGGCTGTGACAAGCAAGTGAAGATGTGGCCATTATTGTCAGGTGGCCAGCCGGTAACTGTGGCCATGCATGATGCTTCTGTTAAAGAGATTGCTTGGATTCCTGAGATGAATGTCTTAGTCAGTGGAAGCTGGGATAAGACTTTAAGGTACTGGGATTTGAGACAATCAAATCCTGTGCATGTTCAACAACTTCCCGAGCGCTGCTATGCACTTTCACTGAGATACCCTCTGATGGTTGTTGGCACAGCAGATAGAAATCTTATAGTTTACAACTTGCAGAACCCTCAGGTGGAGGCCAAGAAAATTGCTTCACTGTTGAAATACCAATCAAGGTTGGTTCAATTGAAGGAAGGGTCGGTGTACATCATTTTGAAGATTCACAACAAAGTAAAAACTTCACTTTCCAATGCCAGAGAGGGCAATGAGATATACTCAGTCAATTCTCTGAACTTCCATCCTGTACATCACACCATTGCAACTGCGGGATCTGATGGCTCTTTTCACTTTTGGGACAAAGATAGCAAGCAGAGACTTAAGGCTTTCTCAAGGTGCAATCAACCCATAACCTGCAGTGCTTTCAACAATGACGGTTCAATATATGCATATTCGGTGTGTTATGATTGGAGTAAGGGTGCGGAAAATCACAATCCAGCAGTAGCAAAGACCAATATTTTCCTGCACGTGACACAGGAGTCTGAGGTCAAACCTAAACCCCGAACTGGGTTCAGAAAATGA

Network for GWHGAAZE018781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	23	49	0.0015
PF00400.33	WD40	68	96	0.071
PF00400.33	WD40	110	139	0.0025
PF00400.33	WD40	232	258	0.026

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14298	RAE1, GLE2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.742
	SRR3591706	second leaf	0.293
	SRR3591707	mature leaf	0.435
	SRR3591708	Shoot apex	1.133
	SRR3591709	Stem	1.145
	SRR3591710	White floral bud	0.170
	SRR3591711	White flower	1.180
	SRR3591712	Green floral bud	0.427
	SRR3591713	Yellow flower	0.249
SRP173429	SRR8316895	Juvenile bud stage	2.323
	SRR8316896	Juvenile bud stage	1.674
	SRR8316897	Juvenile bud stage	0.687
	SRR8316894	Third green stage	0.260
	SRR8316900	Third green stage	0.491
	SRR8316901	Third green stage	0.541
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.120
	SRR8316903	Complete white stage	0.165
	SRR8316902	Silver flowering stage	0.226
	SRR8316904	Silver flowering stage	0.765
	SRR8316905	Silver flowering stage	0.044
	SRR8316906	Gold flowering stage	0.160
	SRR8316907	Gold flowering stage	0.967
	SRR8316908	Gold flowering stage	0.234
SRP132670	SRR6706286	Control	0.165
	SRR6706287	Light intensity 50%	0.121
	SRR6706288	Light intensity 20%	0.071
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.751
	CNS0095593	Slightly white alabastrum(diploid) 2	0.010
	CNS0095594	Slightly white alabastrum(diploid) 3	1.570
	CNS0095595	Whole white alabastrum(diploid) 2	0.202
	CNS0095596	Whole white alabastrum(diploid) 3	0.112
	CNS0095597	Whole white alabastrum(diploid) 4	0.030
	CNS0095598	Silvery flower (diploied) 1	0.126
	CNS0095599	Silvery flower (diploied) 2	0.264
	CNS0095600	Silvery flower (diploied) 3	0.332
	CNS0095601	Golden flower (diploid) 1	0.043
	CNS0095602	Golden flower (diploid) 2	0.276
	CNS0095603	Golden flower (diploid) 3	0.423
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.776
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.278
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.890
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.792
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.171
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.838
	CNS0095610	Silvery flower (tetraploid) 1	2.221
	CNS0095611	Silvery flower (tetraploid) 2	0.197
	CNS0095612	Silvery flower (tetraploid) 3	1.012
	CNS0095613	Golden flower (tetraploid) 1	1.350
	CNS0095614	Golden flower (tetraploid) 2	1.170
	CNS0095615	Golden flower (tetraploid) 3	0.574
CRA001975	CRR073297	Stem 1	4.980
	CRR073298	Stem 2	2.150
	CRR073299	Stem 3	5.579
	CRR073300	Leaf 1	0.222
	CRR073301	Leaf 2	0.043
	CRR073302	Leaf 3	0.224
	CRR073303	Juvenile bud 1	0.199
	CRR073304	Juvenile bud 2	0.310
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.102
	CRR073307	Third green 2	0.092
	CRR073308	Third green 3	0.053
	CRR073309	Second white 1	0.393
	CRR073310	Second white 2	0.153
	CRR073311	Second white 3	0.319
	CRR073312	Silver flowering 1	0.166
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.478
	CRR073318	Tawny withering 1	0.895
	CRR073319	Tawny withering 2	1.199
	CRR073320	Tawny withering 3	0.372