Gene detail

Detail information of GWHGAAZE018783

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009801214.1	PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 2-like [Nicotiana sylvestris]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|A0A067KFX5\|A0A067KFX5_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP30704.1}
TAIR10	AT5G64570.1	beta-D-xylosidase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24292995	24297881	+
GWHAAZE00000005	mRNA	24292995	24297881	+
GWHAAZE00000005	exon	24292995	24293642	+
GWHAAZE00000005	exon	24295137	24295424	+
GWHAAZE00000005	exon	24295824	24295993	+
GWHAAZE00000005	exon	24296079	24296176	+
GWHAAZE00000005	exon	24296378	24297139	+
GWHAAZE00000005	exon	24297244	24297881	+
GWHAAZE00000005	five_prime_UTR	24292995	24293210	+
GWHAAZE00000005	CDS	24293211	24293642	+
GWHAAZE00000005	CDS	24295137	24295424	+
GWHAAZE00000005	CDS	24295824	24295993	+
GWHAAZE00000005	CDS	24296079	24296176	+
GWHAAZE00000005	CDS	24296378	24297139	+
GWHAAZE00000005	CDS	24297244	24297815	+
GWHAAZE00000005	three_prime_UTR	24297816	24297881	+

Transcript Sequence
>GWHTAAZE018805 GGGTGCCTTAGGGTAGATTGTCTGCATTACATTTTTATCTTTCACCAAAAAAATAAAATCAAACATTTAATAAAAACTCATACACTAGCTTACATTTATCCATCACGGATTACTACAAAACACTAAACAACATGTGCTTTTTCAAACCCATCCCTCACATTCTCTCTATATAAACCCCACCCCAACTCACCAATTCTCTCCCACAACTAATTAAACATGGCCTCTAAAAACAGAGTATCAAATACTGGGTACTCTGTTTTTATCATCTTCATCTTAGCTCGTTTTTCTTCCAATTCCATCAATGTTTCGGCCCAAAACTCGGCCGTGTTCGCCTGCGATGTGGCGAAAAACCCAGCATTGGCGAATTTTACCTTCTGCGATTCGAAGGCCGGGGTGAAGGAGAGAGTGGGTGATTTGGTGAAGAGGCTAACATTGACGGAGAAAATTGGGTTCTTGGTGGATAATGCAGTGGGGGTGAGTAGGCTGGGTATACCAAAATATGAGTGGTGGTCCGAGGCTTTACACGGGGTTTCTTATGTAGGTCCAGGGACCCATTTCTCTAGTGTGGTACCTGGTGCTACTAGCTTCCCTCAGGTTATTCTCACTGCTGCTTCTTTCAATGTCTCTCTGTTTGAAGCCATTGGAAAGGTGGTTTCGACAGAAGCTAGAGCAATGTATAACGTTGGTTTAGCCGGGCTAACGTTTTGGTCCCCAAACGTTAACATTTTTCGGGATCCTAGATGGGGTAGAGGTCAGGAAACGCCAGGAGAAGACCCTTTACTTACGAGCAAATATGGAGCGGCATATGTTAGAGGCTTACAAGAAAGAGAAGACGGAGATAAAGACAGACTTAAAGTTGGCGCCTGCTGCAAACATTACACTGCTTATGATGTCGATAACTGGAAAGGAATTGATCGGTACCATTTCAATGCTGTGGTAACAAAGCAAGATATGGATGATACATTTCAACCTCCATTCAAGAGCTGCGTGATTGATGGGAATGTTGCTAGTGTCATGTGTTCCTACAACCAAGTTAATGGCAAGCCAACTTGTGGTGACGCAGACCTATTGGCTGGGGTCATTCGAGGGGAATGGAACTTAAATGGATACATAAGTTCGGATTGCGATTCATTAGATGTGATATTCAAGTCACAAAAATACACCAAAACACCAGAGGAAACCGCAGCATTGGCCATATTGTCTGGTTTGGACCTCAACTGCGGATCTTTCCTATCTCAGTACACACAAACTGCAGTGGACCGGGGGTTGGTGAAAGAATCGGACATCGACAAGGCCATAACGAACAATTTCGCTACACTGATGCGACTTGGGTTCTTTGACGGTGACCCGAGCACGCACATTTACGGAAAATTAGGCCCAAAAGACGTCTGCACTCCAGCGAACCAGGAGCTAGCCCGTGAAGCGGCTAGGCAGGGAATTGTGTTGCTTAAAAACTCCCTCGGATCGCTCCCTCTGTCTCCCTCAACCATTAAGTCCCTAGCAGTGATTGGACCTAATGCCAATGTGACAAAAACCATGATTGGTAACTATGAAGGTACTCCTTGCAAATATACAACTCCTTTGCAAGGCCTAGCCGCATCAGTTGCAACGGTGTATCAGCCAGGTTGTGCCAATACAGCCTGTGGTACGGCTCAATTGGACGAGGCTAAAAAAATAGCGGCTGCAGCAGATGCGGTGGTTTTGGTTATGGGTTCTGATCTGTCCATTGAGGCAGAGAGTCTCGACAGAGTTGATATTACTCTTCCAGGACAACAGTCGCAATTAGTATCGGCAGTTGCAAATGTATCAAAGGGACCTGTGATTCTTGTTATAATGTCCGGAGGAGGGATGGACGTGCAATTCGCAAAAGATAATCCTAAGATTACTAGCATTTTGTGGGTTGGGTTCCCTGGAGAAGCTGGTGGAGGTGCAATAGCTGATGTGATCTTTGGGTTGTACAATCCAAGTGGAAGACTACCCATGAGTTGGTACCCAGAATCATATGTAGACAAAGTCAACATGACAAACATGAACATGAGACCGGATCCAGCCACTGGCTACCCGGGCCGGACCTATCGGTTCTACACCGGGGAAACAGTATACACATTCGGAGATGGACTAAGCTACACAAACTTCAACCACAAGCTAGTCCAAGCGCCCAAACGGGTATCAATCCCACTAGAGGAAGGTCACATTTGTCACTCGTCCAAGTGCAAGTCAATTGACACCGTTGAGCAGACTTGCAAGAATTTAGCTTTCAATATCGATCTAAGAGTTCAGAACGCGGGGAAAGTGGGAGGGAGCCACACGGTGTTCTTGTACTCAAGCCCACCCGCGGTGCACAATTCGCCTCAAAAGCACTTGTTAGGATTTGAGAAGGTGTATTTGAGTCCACAAGCACAAGGGCTTGTGAGGTTCAATTTGGATGTTTGCAAGCATTTGAGTGTGGTTGATGAGAATGGGTTAAGAAAAGTGGCATTGGGACTACATGTACTTCATGTGGGAAACTTGAAACACTCTTTGACTGTGAGGATCTGAAGGAGGATTCATAGTTTCATCATAGCCAATATTTTTTCTTTTTATTTTTTAGACTTGTTTGGGAGG

Network for GWHGAAZE018783

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	118	361	1.20E-34
PF01915.23	Glyco_hydro_3_C	408	637	1.30E-52
PF14310.7	Fn3-like	697	764	1.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15920	XYL4	Metabolic pathways	map01100
K15920	XYL4	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.740
	SRR3591706	second leaf	10.233
	SRR3591707	mature leaf	0.890
	SRR3591708	Shoot apex	17.527
	SRR3591709	Stem	16.825
	SRR3591710	White floral bud	19.821
	SRR3591711	White flower	20.857
	SRR3591712	Green floral bud	12.690
	SRR3591713	Yellow flower	4.651
SRP173429	SRR8316895	Juvenile bud stage	28.031
	SRR8316896	Juvenile bud stage	19.794
	SRR8316897	Juvenile bud stage	14.301
	SRR8316894	Third green stage	12.369
	SRR8316900	Third green stage	48.730
	SRR8316901	Third green stage	33.277
	SRR8316898	Complete white stage	13.261
	SRR8316899	Complete white stage	36.124
	SRR8316903	Complete white stage	20.871
	SRR8316902	Silver flowering stage	16.343
	SRR8316904	Silver flowering stage	13.858
	SRR8316905	Silver flowering stage	4.834
	SRR8316906	Gold flowering stage	6.348
	SRR8316907	Gold flowering stage	13.080
	SRR8316908	Gold flowering stage	16.028
SRP132670	SRR6706286	Control	44.176
	SRR6706287	Light intensity 50%	51.393
	SRR6706288	Light intensity 20%	54.349
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.648
	CNS0095593	Slightly white alabastrum(diploid) 2	31.221
	CNS0095594	Slightly white alabastrum(diploid) 3	25.774
	CNS0095595	Whole white alabastrum(diploid) 2	27.509
	CNS0095596	Whole white alabastrum(diploid) 3	27.581
	CNS0095597	Whole white alabastrum(diploid) 4	15.984
	CNS0095598	Silvery flower (diploied) 1	37.378
	CNS0095599	Silvery flower (diploied) 2	19.428
	CNS0095600	Silvery flower (diploied) 3	21.726
	CNS0095601	Golden flower (diploid) 1	35.895
	CNS0095602	Golden flower (diploid) 2	29.337
	CNS0095603	Golden flower (diploid) 3	27.845
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.356
	CNS0095606	Slightly white alabastrum(tetraploid) 3	85.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.781
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.303
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.038
	CNS0095610	Silvery flower (tetraploid) 1	22.850
	CNS0095611	Silvery flower (tetraploid) 2	21.982
	CNS0095612	Silvery flower (tetraploid) 3	14.813
	CNS0095613	Golden flower (tetraploid) 1	3.753
	CNS0095614	Golden flower (tetraploid) 2	8.966
	CNS0095615	Golden flower (tetraploid) 3	5.608
CRA001975	CRR073297	Stem 1	66.878
	CRR073298	Stem 2	66.134
	CRR073299	Stem 3	74.412
	CRR073300	Leaf 1	79.545
	CRR073301	Leaf 2	92.952
	CRR073302	Leaf 3	99.085
	CRR073303	Juvenile bud 1	46.238
	CRR073304	Juvenile bud 2	37.429
	CRR073305	Juvenile bud 3	70.178
	CRR073306	Third green 1	9.665
	CRR073307	Third green 2	7.526
	CRR073308	Third green 3	11.841
	CRR073309	Second white 1	5.212
	CRR073310	Second white 2	7.248
	CRR073311	Second white 3	6.569
	CRR073312	Silver flowering 1	5.005
	CRR073313	Silver flowering 2	6.082
	CRR073314	Silver flowering 3	9.663
	CRR073315	Gold flowering 1	2.438
	CRR073316	Gold flowering 2	4.263
	CRR073317	Gold flowering 3	4.269
	CRR073318	Tawny withering 1	32.559
	CRR073319	Tawny withering 2	22.505
	CRR073320	Tawny withering 3	26.737