Gene detail

Detail information of GWHGAAZE018789

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008218832.1	4.3376E-173	PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Prunus mume]
Swissprot	tr\|F4KAK5\|PSD2_ARATH	7E-155	Phosphatidylserine decarboxylase 2 alpha chain
trEMBL	tr\|A0A067LD73\|A0A067LD73_JATCU	3E-172	Uncharacterized protein {ECO:0000313\|EMBL:KDP42450.1}
TAIR10	AT5G57190.1	8E-113	phosphatidylserine decarboxylase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24356625	24367684	+
GWHAAZE00000005	mRNA	24356625	24367684	+
GWHAAZE00000005	exon	24356625	24356837	+
GWHAAZE00000005	exon	24357351	24357430	+
GWHAAZE00000005	exon	24358547	24358571	+
GWHAAZE00000005	exon	24359766	24359825	+
GWHAAZE00000005	exon	24361256	24361354	+
GWHAAZE00000005	exon	24362198	24362305	+
GWHAAZE00000005	exon	24362397	24362447	+
GWHAAZE00000005	exon	24363671	24363754	+
GWHAAZE00000005	exon	24364090	24364181	+
GWHAAZE00000005	exon	24365078	24365246	+
GWHAAZE00000005	exon	24367151	24367262	+
GWHAAZE00000005	exon	24367578	24367684	+
GWHAAZE00000005	CDS	24356625	24356837	+
GWHAAZE00000005	CDS	24357351	24357430	+
GWHAAZE00000005	CDS	24358547	24358571	+
GWHAAZE00000005	CDS	24359766	24359825	+
GWHAAZE00000005	CDS	24361256	24361354	+
GWHAAZE00000005	CDS	24362198	24362305	+
GWHAAZE00000005	CDS	24362397	24362447	+
GWHAAZE00000005	CDS	24363671	24363754	+
GWHAAZE00000005	CDS	24364090	24364181	+
GWHAAZE00000005	CDS	24365078	24365246	+
GWHAAZE00000005	CDS	24367151	24367262	+
GWHAAZE00000005	CDS	24367578	24367684	+

Transcript Sequence
>GWHTAAZE018811 ATGGGACATGGAAGCTCGAAATCCTCATCGGATTCTTCAGAGGAATCCTCTACAGAGTCCTCCTCTCGTATGTCTCGATTGAAGCGCCGACTTCACCGTCATCGCCACCACCAACATCATCATCGACATCGTAAAAGCGGCAAATCAAAATCTCATTCCAAGCTCCTCCACGCAGAGGATTTCGCTGGAATCGCTCTAATCAAACTCATCAGTGCAGAGCTCAAGTTCGAGGACAAATGGCTTGCTTGTATCTCTCTTGGGGAACAGACCTTCAGAACTGACATATCTAATCACACTGACAAGCCTACCTGGAACTCTGAGAAAAAAGTTCTCTTGGAAAGAAATGGGCCACGTTTTGCAAGAATATCTGTATTCGAGTCTACTTTACCAGCTTTAGTTCATATGCAGACTAACAGACTATCCAAGAACACTGTCGTCGCGTATTGCGAGATCGATCTGTTTGAATTCCTTGCACGGGAAGTTATCTTGCAGGAATCAGATTCTGAGTTTGAGGTATTTAGCCTTTTAGATCCATCCTCATCTGACATAGTAGTGGGCAAAATTTGTATTTCATGTTCTGTGGAGGATCCTATTGAAACAGAAAGAAGTTTTGCAAGACGGGTCTTGTCCATAGTGGACTACAATGAGGATGGAAAGCTTTCATTTGCTGAGTTCACTGATTTAATTAACGCATTCGGCAATCAACTAGCTGCTAACAAGAAAGAGGAGCTTTTTAAAGCAGCCGACGAGAACGGGGATGGTGTTGTCAGCATGGATGAGTTGGCTACACTTATGGCTCTTCTACAAGAAAAGATTGCAACACCATTTCTCACTGCCCTTATTTCTGTTCTTGGATTCCGTTCTTGCAGGGAGCCACTTATTAATTGTTGTCCTGTATGTGGCGAGGTTCTTGAAGTTTCTGATAAGCTGAACAATATGATACACTTGACCTTGTGCTTTGATGAAGGGACTGGAAAGCAGGTTTTTGATAGGAGGACAAAGAGGCTAGTCGAGGAAATAATTGATAAAAAGATTGTTTTATCAATGAGAGCCATTTATCAATCTAAACTTGGATTGGGCCTTCTGGACAAAGGGGCAAAAGAACTCTTGCAGAGCATCTCGGAAAAGCAGGGCAGGAAAATGAATTCTGTTGAATCGGCTAAGGATATACCGAGTTTCATTGAATTTTTTAAGGCATGA

Network for GWHGAAZE018789

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0137
CFinderModule0210

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13833.7	EF-hand_8	216	266	2.10E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01613	psd, PISD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.749
	SRR3591706	second leaf	30.443
	SRR3591707	mature leaf	38.768
	SRR3591708	Shoot apex	45.351
	SRR3591709	Stem	82.687
	SRR3591710	White floral bud	22.361
	SRR3591711	White flower	22.258
	SRR3591712	Green floral bud	11.093
	SRR3591713	Yellow flower	24.308
SRP173429	SRR8316895	Juvenile bud stage	18.189
	SRR8316896	Juvenile bud stage	30.021
	SRR8316897	Juvenile bud stage	12.707
	SRR8316894	Third green stage	13.339
	SRR8316900	Third green stage	22.990
	SRR8316901	Third green stage	23.690
	SRR8316898	Complete white stage	6.194
	SRR8316899	Complete white stage	25.699
	SRR8316903	Complete white stage	18.115
	SRR8316902	Silver flowering stage	8.720
	SRR8316904	Silver flowering stage	11.621
	SRR8316905	Silver flowering stage	5.648
	SRR8316906	Gold flowering stage	23.301
	SRR8316907	Gold flowering stage	16.105
	SRR8316908	Gold flowering stage	21.078
SRP132670	SRR6706286	Control	26.227
	SRR6706287	Light intensity 50%	23.324
	SRR6706288	Light intensity 20%	19.130
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.820
	CNS0095593	Slightly white alabastrum(diploid) 2	10.910
	CNS0095594	Slightly white alabastrum(diploid) 3	12.957
	CNS0095595	Whole white alabastrum(diploid) 2	11.081
	CNS0095596	Whole white alabastrum(diploid) 3	9.483
	CNS0095597	Whole white alabastrum(diploid) 4	7.429
	CNS0095598	Silvery flower (diploied) 1	27.830
	CNS0095599	Silvery flower (diploied) 2	23.232
	CNS0095600	Silvery flower (diploied) 3	16.533
	CNS0095601	Golden flower (diploid) 1	26.777
	CNS0095602	Golden flower (diploid) 2	29.039
	CNS0095603	Golden flower (diploid) 3	27.075
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.450
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.010
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.463
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.292
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.764
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.511
	CNS0095610	Silvery flower (tetraploid) 1	15.761
	CNS0095611	Silvery flower (tetraploid) 2	17.632
	CNS0095612	Silvery flower (tetraploid) 3	8.766
	CNS0095613	Golden flower (tetraploid) 1	6.671
	CNS0095614	Golden flower (tetraploid) 2	15.678
	CNS0095615	Golden flower (tetraploid) 3	10.508
CRA001975	CRR073297	Stem 1	18.983
	CRR073298	Stem 2	13.809
	CRR073299	Stem 3	10.896
	CRR073300	Leaf 1	12.224
	CRR073301	Leaf 2	13.211
	CRR073302	Leaf 3	7.733
	CRR073303	Juvenile bud 1	5.729
	CRR073304	Juvenile bud 2	3.257
	CRR073305	Juvenile bud 3	8.740
	CRR073306	Third green 1	5.739
	CRR073307	Third green 2	4.908
	CRR073308	Third green 3	5.437
	CRR073309	Second white 1	3.039
	CRR073310	Second white 2	3.790
	CRR073311	Second white 3	4.927
	CRR073312	Silver flowering 1	1.869
	CRR073313	Silver flowering 2	1.009
	CRR073314	Silver flowering 3	2.349
	CRR073315	Gold flowering 1	4.822
	CRR073316	Gold flowering 2	10.584
	CRR073317	Gold flowering 3	3.974
	CRR073318	Tawny withering 1	10.717
	CRR073319	Tawny withering 2	8.963
	CRR073320	Tawny withering 3	12.206