Gene detail

Detail information of GWHGAAZE018791

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007221805.1	5.0605E-118	hypothetical protein PRUPE_ppa006115mg [Prunus persica]
Swissprot	tr\|A4GNA8\|PSD3_ARATH	3E-101	Phosphatidylserine decarboxylase 3 alpha chain
trEMBL	tr\|M5XAN3\|M5XAN3_PRUPE	2E-118	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23004.1}
TAIR10	AT4G25970.1	7E-85	phosphatidylserine decarboxylase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24369071	24372378	+
GWHAAZE00000005	mRNA	24369071	24372378	+
GWHAAZE00000005	exon	24369071	24369259	+
GWHAAZE00000005	exon	24370424	24370519	+
GWHAAZE00000005	exon	24370625	24370699	+
GWHAAZE00000005	exon	24370807	24370899	+
GWHAAZE00000005	exon	24372061	24372111	+
GWHAAZE00000005	exon	24372229	24372378	+
GWHAAZE00000005	CDS	24369071	24369259	+
GWHAAZE00000005	CDS	24370424	24370519	+
GWHAAZE00000005	CDS	24370625	24370699	+
GWHAAZE00000005	CDS	24370807	24370899	+
GWHAAZE00000005	CDS	24372061	24372111	+
GWHAAZE00000005	CDS	24372229	24372378	+

Transcript Sequence
>GWHTAAZE018813 ATGTCCTTCAGTGAATTGAAATCATCAGTATTCTGTGTGCAGACATTTAATGAATTTTTTATAAGGGAGTTAACACCTGGAGCAAGACCAATTGCCTTTGTGGAACGTGATGATGTTGCTGTATGCGCTGCCGATAGCCGTCTAATGGCATTTAAAAGTGCTGAAAATAGTCTACGATTTTGGATTAAGGGTCGAAAGTTTTCTATCCAAGGTCTTCTGGGGAAAGAAGCATGCTCTAGTGCTTTCATTGGTGGGACCTTGGTTATATTCCGATTGGCACCACAGGATTATCATCGGTTCCATTCTCCAGTTTCTGGAACTATTGAGCAGTTTGTTGATATACCCGGATGCCTATATACGGTTAATCCAATTGCTGTGAATAGCAAGTACTGCAATGTGTTTACGGAGAATAAGAGGACTGTTTCTGTTATTTCAACAGCAGATTTTGGAAAGTTGGGATATTTCTCATTTGGTGGAAGTACCGTCATTTGCGTCTTTGAAAAGGATACGATAGAGATAGACGAGGATCTATTGGCAAATAGTGCAAGATCACTTGAGACTTTAGTTGCTGTTGGAATGAAATTGGGAATCTCTGTAAAGAAACAGGCTGAAATCCAGTTGCCAAACATCGAAAACTGCATCTTAGGGTCTTGA

Network for GWHGAAZE018791

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0210

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02666.16	PS_Dcarbxylase	16	150	4.40E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01613	psd, PISD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0008654	biological_process	phospholipid biosynthetic process
GO:0004609	molecular_function	phosphatidylserine decarboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.690
	SRR3591706	second leaf	40.430
	SRR3591707	mature leaf	53.343
	SRR3591708	Shoot apex	67.957
	SRR3591709	Stem	124.552
	SRR3591710	White floral bud	24.480
	SRR3591711	White flower	33.995
	SRR3591712	Green floral bud	15.873
	SRR3591713	Yellow flower	32.143
SRP173429	SRR8316895	Juvenile bud stage	24.745
	SRR8316896	Juvenile bud stage	42.093
	SRR8316897	Juvenile bud stage	16.310
	SRR8316894	Third green stage	16.739
	SRR8316900	Third green stage	27.237
	SRR8316901	Third green stage	31.404
	SRR8316898	Complete white stage	7.462
	SRR8316899	Complete white stage	33.902
	SRR8316903	Complete white stage	21.622
	SRR8316902	Silver flowering stage	11.432
	SRR8316904	Silver flowering stage	15.046
	SRR8316905	Silver flowering stage	8.273
	SRR8316906	Gold flowering stage	21.769
	SRR8316907	Gold flowering stage	21.696
	SRR8316908	Gold flowering stage	26.065
SRP132670	SRR6706286	Control	7.615
	SRR6706287	Light intensity 50%	6.824
	SRR6706288	Light intensity 20%	5.924
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.232
	CNS0095593	Slightly white alabastrum(diploid) 2	36.413
	CNS0095594	Slightly white alabastrum(diploid) 3	44.616
	CNS0095595	Whole white alabastrum(diploid) 2	35.050
	CNS0095596	Whole white alabastrum(diploid) 3	25.789
	CNS0095597	Whole white alabastrum(diploid) 4	25.838
	CNS0095598	Silvery flower (diploied) 1	51.764
	CNS0095599	Silvery flower (diploied) 2	45.769
	CNS0095600	Silvery flower (diploied) 3	16.205
	CNS0095601	Golden flower (diploid) 1	57.824
	CNS0095602	Golden flower (diploid) 2	29.106
	CNS0095603	Golden flower (diploid) 3	28.879
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.138
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.391
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.838
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.266
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.275
	CNS0095610	Silvery flower (tetraploid) 1	19.403
	CNS0095611	Silvery flower (tetraploid) 2	19.066
	CNS0095612	Silvery flower (tetraploid) 3	12.297
	CNS0095613	Golden flower (tetraploid) 1	15.533
	CNS0095614	Golden flower (tetraploid) 2	21.711
	CNS0095615	Golden flower (tetraploid) 3	9.301
CRA001975	CRR073297	Stem 1	12.314
	CRR073298	Stem 2	8.219
	CRR073299	Stem 3	6.718
	CRR073300	Leaf 1	8.555
	CRR073301	Leaf 2	11.608
	CRR073302	Leaf 3	3.398
	CRR073303	Juvenile bud 1	5.819
	CRR073304	Juvenile bud 2	2.388
	CRR073305	Juvenile bud 3	5.452
	CRR073306	Third green 1	3.325
	CRR073307	Third green 2	2.937
	CRR073308	Third green 3	2.481
	CRR073309	Second white 1	3.121
	CRR073310	Second white 2	3.541
	CRR073311	Second white 3	1.779
	CRR073312	Silver flowering 1	1.997
	CRR073313	Silver flowering 2	1.901
	CRR073314	Silver flowering 3	2.185
	CRR073315	Gold flowering 1	4.857
	CRR073316	Gold flowering 2	9.369
	CRR073317	Gold flowering 3	4.607
	CRR073318	Tawny withering 1	11.616
	CRR073319	Tawny withering 2	15.371
	CRR073320	Tawny withering 3	10.607