Gene detail

Detail information of GWHGAAZE018804

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFK44234.1	0	unknown [Medicago truncatula]
Swissprot	tr\|Q75HX5\|TLP8_ORYSJ	3E-165	Tubby-like F-box protein 8
trEMBL	tr\|I3SVE2\|I3SVE2_MEDTR	0	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR10	AT1G43640.1	2E-118	tubby like protein 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24571371	24574721	+
GWHAAZE00000005	mRNA	24571371	24574721	+
GWHAAZE00000005	exon	24571371	24571718	+
GWHAAZE00000005	exon	24571908	24571995	+
GWHAAZE00000005	exon	24572704	24572805	+
GWHAAZE00000005	exon	24573190	24573322	+
GWHAAZE00000005	exon	24574157	24574721	+
GWHAAZE00000005	CDS	24571371	24571718	+
GWHAAZE00000005	CDS	24571908	24571995	+
GWHAAZE00000005	CDS	24572704	24572805	+
GWHAAZE00000005	CDS	24573190	24573322	+
GWHAAZE00000005	CDS	24574157	24574721	+

Transcript Sequence
>GWHTAAZE018826 ATGTCGTTCCGAAGTATAGTTCGTGATGTAAGAGACAGTTTTGGGAGCTTATCAAGGCGGAGTTTCGATGTGAGGTTGCATGGTCATCACAGGGGAAAGTCGCACGGTGCAGTGAACGAGTTGAATGATCAGCCGCTTGTTATTCAAAGTAGCCGTTGGGCTAATCTCCCTCCCGAGCTGCTTTGCGATGTGATTAAAAGGCTGGAAGAGAGTGAAAGCACTTGGCCTGCTCGAAAGCATGTTGTTGCATGCTCTGCTGTTTGCAGATCATGGAGGAGTATGTGCAAAGAAATTGTTAGAAGCCCAGAGTCCTGTGGGAAGCTTACATTCCCAGTCTCTCTCAAGCAGCCAGGCCCTCGTGATGGAATGATGCAGTGCTTCATCAAAAGGGATAAATCTAATTTAACTTACCACCTTTTCCTGTGCCTCAGCCCCGACCCTCCGCAGATGAGCCCAGGCTGCATAAGAAAAATCCTCCGTAGCCTACAATCCTCCTGCAGTATCCTCCATGGAATGAAAGGCTTTTTCAGGTTTTCAGCACTGCTAGTTGAAAATGGAAAGTTCCTTCTATCTGCAAAAAGGACTCGGCGAACTACTTGCACAGAGTATGTTGTCTCCATGGATGCTGATAACATCTCAAGATCGAGCAGCACTTATATTGGAAAGCTAAGCCCATATCACCTACGAGCTCAATGTGCTCGGCACCCGTGGCCCGCGCAGAATGCACTGCACCATGCACTCAATCCCCATCTCGCCCTCGAACCCAACGGCACAGTCCCTGGTCAACCTGAGCTTCTCCCCCGGTCCCTTGAGGACTCGTTCCGTAGCATGTCTTTCTCAAAGTCAATGGACCACTCAGTCGAGTTCAACAGCTCGCGGTTCTCAGAAATTGGTGCACCATGCACCGAGGGTGAGGATAGCAAGGCCAAGCCCTTGGTTCTCAAGAACAAGGCGCCTAGGTGGCACGAGCAGTTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGGGTGACCGTCGCATCTGTGAAGAATTTTCAGTTGATTGCTGGATCACAGCCGGCGACTGTAGCCCCGAATGCGACACAGCCGGCCCCACCACCGGACCACGATAAAGTAATATTGCAGTTTGGTAAGGTTGGGAAGGATATGTTTACGATGGATTATCGGTATCCGCTTTCTGCCTTTCAGGCTTTTGCCATTTGCTTGAGTAGCTTTGATACTAAATTGGCTTGTGAATAG

Network for GWHGAAZE018804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	52	105	8.80E-11
PF01167.19	Tub	116	145	2.90E-07
PF01167.19	Tub	183	225	3.10E-12
PF01167.19	Tub	281	406	1.90E-52

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.441
	SRR3591706	second leaf	19.308
	SRR3591707	mature leaf	15.856
	SRR3591708	Shoot apex	35.472
	SRR3591709	Stem	54.043
	SRR3591710	White floral bud	46.413
	SRR3591711	White flower	69.617
	SRR3591712	Green floral bud	37.216
	SRR3591713	Yellow flower	58.649
SRP173429	SRR8316895	Juvenile bud stage	32.442
	SRR8316896	Juvenile bud stage	28.409
	SRR8316897	Juvenile bud stage	19.735
	SRR8316894	Third green stage	11.754
	SRR8316900	Third green stage	27.677
	SRR8316901	Third green stage	32.153
	SRR8316898	Complete white stage	11.387
	SRR8316899	Complete white stage	55.260
	SRR8316903	Complete white stage	20.735
	SRR8316902	Silver flowering stage	19.297
	SRR8316904	Silver flowering stage	19.029
	SRR8316905	Silver flowering stage	11.821
	SRR8316906	Gold flowering stage	51.923
	SRR8316907	Gold flowering stage	49.290
	SRR8316908	Gold flowering stage	57.437
SRP132670	SRR6706286	Control	35.576
	SRR6706287	Light intensity 50%	36.498
	SRR6706288	Light intensity 20%	33.929
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.837
	CNS0095593	Slightly white alabastrum(diploid) 2	36.772
	CNS0095594	Slightly white alabastrum(diploid) 3	25.930
	CNS0095595	Whole white alabastrum(diploid) 2	29.398
	CNS0095596	Whole white alabastrum(diploid) 3	20.807
	CNS0095597	Whole white alabastrum(diploid) 4	25.590
	CNS0095598	Silvery flower (diploied) 1	61.367
	CNS0095599	Silvery flower (diploied) 2	42.048
	CNS0095600	Silvery flower (diploied) 3	49.144
	CNS0095601	Golden flower (diploid) 1	55.104
	CNS0095602	Golden flower (diploid) 2	70.391
	CNS0095603	Golden flower (diploid) 3	67.756
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.260
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.468
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.914
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.160
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.671
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.086
	CNS0095610	Silvery flower (tetraploid) 1	31.623
	CNS0095611	Silvery flower (tetraploid) 2	32.908
	CNS0095612	Silvery flower (tetraploid) 3	67.529
	CNS0095613	Golden flower (tetraploid) 1	33.081
	CNS0095614	Golden flower (tetraploid) 2	30.728
	CNS0095615	Golden flower (tetraploid) 3	42.585
CRA001975	CRR073297	Stem 1	57.508
	CRR073298	Stem 2	61.755
	CRR073299	Stem 3	69.986
	CRR073300	Leaf 1	64.739
	CRR073301	Leaf 2	71.703
	CRR073302	Leaf 3	68.880
	CRR073303	Juvenile bud 1	59.720
	CRR073304	Juvenile bud 2	65.391
	CRR073305	Juvenile bud 3	87.856
	CRR073306	Third green 1	100.978
	CRR073307	Third green 2	83.837
	CRR073308	Third green 3	85.829
	CRR073309	Second white 1	112.904
	CRR073310	Second white 2	93.077
	CRR073311	Second white 3	100.223
	CRR073312	Silver flowering 1	247.656
	CRR073313	Silver flowering 2	264.823
	CRR073314	Silver flowering 3	235.410
	CRR073315	Gold flowering 1	47.872
	CRR073316	Gold flowering 2	56.106
	CRR073317	Gold flowering 3	63.001
	CRR073318	Tawny withering 1	100.667
	CRR073319	Tawny withering 2	109.468
	CRR073320	Tawny withering 3	91.427