Detail information of GWHGAAZE018815


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006349409.15.2669E-101PREDICTED: partner of Y14 and mago-like [Solanum tuberosum]
trEMBLtr|M1C728|M1C728_SOLTU2E-101Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400061112}
TAIR10AT1G11400.31E-34partner of Y14-MAGO

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2479843724804793-
GWHAAZE00000005mRNA2479843724804793-
GWHAAZE00000005exon2480459324804793-
GWHAAZE00000005exon2480326324803382-
GWHAAZE00000005exon2479946824799692-
GWHAAZE00000005exon2479843724798904-
GWHAAZE00000005CDS2480459324804793-
GWHAAZE00000005CDS2480326324803382-
GWHAAZE00000005CDS2479946824799692-
GWHAAZE00000005CDS2479877024798904-
GWHAAZE00000005three_prime_UTR2479843724798769-
Transcript Sequence

Network for GWHGAAZE018815

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09282.11Mago-bind28544.60E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14294WIBG, PYM RNA transport map03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.996
SRR3591706second leaf10.928
SRR3591707mature leaf9.480
SRR3591708Shoot apex15.289
SRR3591709Stem11.856
SRR3591710White floral bud11.213
SRR3591711White flower14.865
SRR3591712Green floral bud16.332
SRR3591713Yellow flower12.269
SRP173429 SRR8316895Juvenile bud stage 17.638
SRR8316896Juvenile bud stage 19.314
SRR8316897Juvenile bud stage 9.724
SRR8316894Third green stage 7.375
SRR8316900Third green stage 24.360
SRR8316901Third green stage 23.204
SRR8316898Complete white stage 6.536
SRR8316899Complete white stage 30.327
SRR8316903Complete white stage 12.120
SRR8316902Silver flowering stage7.500
SRR8316904Silver flowering stage8.829
SRR8316905Silver flowering stage3.881
SRR8316906Gold flowering stage 13.861
SRR8316907Gold flowering stage 12.594
SRR8316908Gold flowering stage 14.020
SRP132670SRR6706286Control19.318
SRR6706287Light intensity 50%17.588
SRR6706288Light intensity 20%19.966
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.377
CNS0095593Slightly white alabastrum(diploid) 222.176
CNS0095594Slightly white alabastrum(diploid) 321.195
CNS0095595Whole white alabastrum(diploid) 218.294
CNS0095596Whole white alabastrum(diploid) 318.430
CNS0095597Whole white alabastrum(diploid) 417.184
CNS0095598Silvery flower (diploied) 117.962
CNS0095599Silvery flower (diploied) 218.037
CNS0095600Silvery flower (diploied) 318.439
CNS0095601Golden flower (diploid) 116.984
CNS0095602Golden flower (diploid) 218.539
CNS0095603Golden flower (diploid) 315.659
CNS0095604Slightly white alabastrum(tetraploid) 121.275
CNS0095605Slightly white alabastrum(tetraploid) 222.927
CNS0095606Slightly white alabastrum(tetraploid) 330.392
CNS0095607Whole white alabastrum(tetraploid) 115.859
CNS0095608Whole white alabastrum(tetraploid) 215.074
CNS0095609Whole white alabastrum(tetraploid) 318.398
CNS0095610Silvery flower (tetraploid) 115.029
CNS0095611Silvery flower (tetraploid) 215.292
CNS0095612Silvery flower (tetraploid) 310.872
CNS0095613Golden flower (tetraploid) 114.778
CNS0095614Golden flower (tetraploid) 215.279
CNS0095615Golden flower (tetraploid) 38.385
CRA001975CRR073297Stem 125.403
CRR073298Stem 224.438
CRR073299Stem 329.998
CRR073300Leaf 126.490
CRR073301Leaf 225.088
CRR073302Leaf 324.843
CRR073303Juvenile bud 123.209
CRR073304Juvenile bud 220.445
CRR073305Juvenile bud 324.934
CRR073306Third green 19.184
CRR073307Third green 27.643
CRR073308Third green 39.168
CRR073309Second white 16.081
CRR073310Second white 210.449
CRR073311Second white 39.499
CRR073312Silver flowering 17.982
CRR073313Silver flowering 210.183
CRR073314Silver flowering 39.385
CRR073315Gold flowering 111.774
CRR073316Gold flowering 215.048
CRR073317Gold flowering 313.627
CRR073318Tawny withering 121.580
CRR073319Tawny withering 214.008
CRR073320Tawny withering 321.689