Detail information of GWHGAAZE018831


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273123.10PREDICTED: F-box protein At1g10780 [Vitis vinifera]
Swissprottr|Q9SAC4|FB2_ARATH0F-box protein At1g10780
trEMBLtr|F6H958|F6H958_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB48710.1}
TAIR10AT1G10780.12E-153F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2520552225207711+
GWHAAZE00000005mRNA2520552225207711+
GWHAAZE00000005exon2520552225206263+
GWHAAZE00000005exon2520635725206637+
GWHAAZE00000005exon2520747525207711+
GWHAAZE00000005CDS2520552225206263+
GWHAAZE00000005CDS2520635725206637+
GWHAAZE00000005CDS2520747525207711+
Transcript Sequence

Network for GWHGAAZE018831

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.815
SRR3591706second leaf1.164
SRR3591707mature leaf0.234
SRR3591708Shoot apex10.190
SRR3591709Stem2.037
SRR3591710White floral bud0.725
SRR3591711White flower1.042
SRR3591712Green floral bud1.080
SRR3591713Yellow flower0.430
SRP173429 SRR8316895Juvenile bud stage 1.957
SRR8316896Juvenile bud stage 1.810
SRR8316897Juvenile bud stage 1.521
SRR8316894Third green stage 0.433
SRR8316900Third green stage 1.287
SRR8316901Third green stage 0.499
SRR8316898Complete white stage 0.127
SRR8316899Complete white stage 1.327
SRR8316903Complete white stage 0.266
SRR8316902Silver flowering stage0.229
SRR8316904Silver flowering stage0.378
SRR8316905Silver flowering stage0.039
SRR8316906Gold flowering stage 0.221
SRR8316907Gold flowering stage 0.521
SRR8316908Gold flowering stage 0.153
SRP132670SRR6706286Control0.641
SRR6706287Light intensity 50%0.844
SRR6706288Light intensity 20%1.068
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.965
CNS0095593Slightly white alabastrum(diploid) 21.982
CNS0095594Slightly white alabastrum(diploid) 31.695
CNS0095595Whole white alabastrum(diploid) 20.800
CNS0095596Whole white alabastrum(diploid) 30.536
CNS0095597Whole white alabastrum(diploid) 40.659
CNS0095598Silvery flower (diploied) 11.199
CNS0095599Silvery flower (diploied) 20.579
CNS0095600Silvery flower (diploied) 30.719
CNS0095601Golden flower (diploid) 10.675
CNS0095602Golden flower (diploid) 20.500
CNS0095603Golden flower (diploid) 30.554
CNS0095604Slightly white alabastrum(tetraploid) 12.328
CNS0095605Slightly white alabastrum(tetraploid) 21.402
CNS0095606Slightly white alabastrum(tetraploid) 33.061
CNS0095607Whole white alabastrum(tetraploid) 10.567
CNS0095608Whole white alabastrum(tetraploid) 20.475
CNS0095609Whole white alabastrum(tetraploid) 31.337
CNS0095610Silvery flower (tetraploid) 10.949
CNS0095611Silvery flower (tetraploid) 20.654
CNS0095612Silvery flower (tetraploid) 30.797
CNS0095613Golden flower (tetraploid) 10.114
CNS0095614Golden flower (tetraploid) 20.392
CNS0095615Golden flower (tetraploid) 30.270
CRA001975CRR073297Stem 11.610
CRR073298Stem 21.889
CRR073299Stem 33.117
CRR073300Leaf 11.867
CRR073301Leaf 21.188
CRR073302Leaf 31.609
CRR073303Juvenile bud 11.138
CRR073304Juvenile bud 20.586
CRR073305Juvenile bud 30.776
CRR073306Third green 10.203
CRR073307Third green 20.335
CRR073308Third green 30.317
CRR073309Second white 10.412
CRR073310Second white 20.439
CRR073311Second white 30.181
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.245
CRR073314Silver flowering 30.079
CRR073315Gold flowering 11.372
CRR073316Gold flowering 21.043
CRR073317Gold flowering 30.702
CRR073318Tawny withering 14.253
CRR073319Tawny withering 22.928
CRR073320Tawny withering 33.520