Gene detail

Detail information of GWHGAAZE018839

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011038236.1	1.0474E-147	PREDICTED: probable receptor-like protein kinase At1g11050 isoform X3 [Populus euphratica]
Swissprot	tr\|O04086\|Y1105_ARATH	8E-101	Probable receptor-like protein kinase At1g11050 (Precursor)
trEMBL	tr\|U5FH91\|U5FH91_POPTR	9E-148	Kinase family protein {ECO:0000313\|EMBL:ERP50340.1}
TAIR10	AT1G11050.1	5E-77	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	25335626	25337557	+
GWHAAZE00000005	mRNA	25335626	25337557	+
GWHAAZE00000005	exon	25335626	25336487	+
GWHAAZE00000005	exon	25336632	25336866	+
GWHAAZE00000005	exon	25337176	25337557	+
GWHAAZE00000005	CDS	25335626	25336487	+
GWHAAZE00000005	CDS	25336632	25336866	+
GWHAAZE00000005	CDS	25337176	25337557	+

Transcript Sequence
>GWHTAAZE018861 ATGAACCCCACTTTCTTGATTTTCTTTCTACTACTGTGTCTCTCTATATCACCATCTCTTTCTGCATCTAACAATTCCTCATGTCCGATGGATCTTGGCTTTGTCTTGAGAGTCCCATGGCCTACTTCTGATTGCAAAACAGTACACCCTCAATCCAAAAATAGTTCCTCAAATTCAACTACTTGTTGCCAAACACTCCTTAGTCTTTATGGCATAGCTCTCTCAAATCACCTCAGAGAAACCTCTCAATTTCAATTACCAGACTTACCCACCTCCATTTCTTGCTTGAATGATTACCAATCCAAGCTCAATTCCCTCTCTTTACCTTCTAATATCACCTCTCTTTGCTTTGACCCACTTCAGTTTGTCATTTCCCCCAACATTTGTGCTTCAATTCAGTCCAAACAAGATTGGGTTGATAAGCTGGGACCCACCACAGCCCTAGACACCGGCTGCCGGCAGGACCTTAATGATTTAACCGCCTGTGATGCCTGCGTGGCCGCCGGTTTTAGGGTACAGGGAGAGTTGATTGGGATTGATGGTAATACATCTCATTCCACTGATTGTTTTTACTTCACTATACTGTATGCTGCTGGGATTGTTAATGAATTTGGACCCGAAGGTACTGGTACGGTTTCTTGTATTTTTGGGATTTCGACTAGTCCTCATGTGGGTTCTAGGAGTAAGGGGAAATCGGCTCTGGTGTTTGGGCTCACTGGAGGGTTTTCCGCGGTGATTGTGATGTCTTTCTTGATGGGGATGTACGTTTGGTGGGATAGAAAGTGGAGGAAGAAAAGGAATAAAGGGTTTGGCGTAGATTGCGAGGAATTGGGGTCTAGGCCGAGAATGAGGCCTAATACTGAGTCAGATTTTCAAGGCAATAATGAGTTTTGCAATGAAGTTGAGATCATTAGTAATTTGAAGCATCGGAATCTTGTACCGCTTAGAGGATGTTGTGTGACCGGCGAAGAAGATGAGTATAACGAGAGAGGGAGTGAGTGGTACCTTGTTTATGATTACATGCCTAATGGGAATCTTGATGACCATTTGTTTCCTTCATTGGAGGGTCAAACGGGAAGCGTGAAGCAGCCATTGTCAAAAGCGCTTGATTTGTCTTCCTCTGGCCTGCCTTGTGCTTTTTTAATAACGGATTGGGCTTGGTCACTTGTGAAGGCGGGTAAGCTTGAAGAGGTGTTGGATAGTTCTCTTTTGAGAGATGGGGAAATGGAGGGTTCAAATCCGAAAGGAATAATGGAGAGATTCTTACATGTTGGGATTTTGTGCGCTCATGTAATGGTGGCTTTGAGGCCTACTATTATGGACGCATTGAGAATGCTGGAGGGAGATATTGAGGTTCCTCCAATACCAGATAGGCCAACACCACTTGGCCATCCTTCATTTTATAAGGATGCTAATACTTTTAGCATATCGCCTACTTTGAGTGGGCTGCAATTACATTCCGGAGATATGCTTAGGTAA

Network for GWHGAAZE018839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF19160.1	SPARK	24	190	6.90E-33
PF07714.18	PK_Tyr_Ser-Thr	292	353	2.90E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RKF3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.877
	SRR3591706	second leaf	8.589
	SRR3591707	mature leaf	12.623
	SRR3591708	Shoot apex	9.030
	SRR3591709	Stem	19.738
	SRR3591710	White floral bud	8.899
	SRR3591711	White flower	13.234
	SRR3591712	Green floral bud	5.921
	SRR3591713	Yellow flower	11.864
SRP173429	SRR8316895	Juvenile bud stage	8.849
	SRR8316896	Juvenile bud stage	5.119
	SRR8316897	Juvenile bud stage	4.657
	SRR8316894	Third green stage	2.873
	SRR8316900	Third green stage	4.079
	SRR8316901	Third green stage	4.398
	SRR8316898	Complete white stage	1.698
	SRR8316899	Complete white stage	9.027
	SRR8316903	Complete white stage	3.613
	SRR8316902	Silver flowering stage	2.507
	SRR8316904	Silver flowering stage	3.413
	SRR8316905	Silver flowering stage	0.982
	SRR8316906	Gold flowering stage	5.370
	SRR8316907	Gold flowering stage	6.121
	SRR8316908	Gold flowering stage	9.399
SRP132670	SRR6706286	Control	5.774
	SRR6706287	Light intensity 50%	7.037
	SRR6706288	Light intensity 20%	6.125
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.560
	CNS0095593	Slightly white alabastrum(diploid) 2	3.559
	CNS0095594	Slightly white alabastrum(diploid) 3	5.739
	CNS0095595	Whole white alabastrum(diploid) 2	3.851
	CNS0095596	Whole white alabastrum(diploid) 3	2.358
	CNS0095597	Whole white alabastrum(diploid) 4	5.003
	CNS0095598	Silvery flower (diploied) 1	9.166
	CNS0095599	Silvery flower (diploied) 2	6.907
	CNS0095600	Silvery flower (diploied) 3	10.244
	CNS0095601	Golden flower (diploid) 1	16.938
	CNS0095602	Golden flower (diploid) 2	14.838
	CNS0095603	Golden flower (diploid) 3	14.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.754
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.729
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.205
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.780
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.673
	CNS0095610	Silvery flower (tetraploid) 1	6.556
	CNS0095611	Silvery flower (tetraploid) 2	7.374
	CNS0095612	Silvery flower (tetraploid) 3	4.894
	CNS0095613	Golden flower (tetraploid) 1	3.894
	CNS0095614	Golden flower (tetraploid) 2	7.784
	CNS0095615	Golden flower (tetraploid) 3	5.348
CRA001975	CRR073297	Stem 1	5.998
	CRR073298	Stem 2	6.097
	CRR073299	Stem 3	6.136
	CRR073300	Leaf 1	5.602
	CRR073301	Leaf 2	6.781
	CRR073302	Leaf 3	4.938
	CRR073303	Juvenile bud 1	5.626
	CRR073304	Juvenile bud 2	3.856
	CRR073305	Juvenile bud 3	10.884
	CRR073306	Third green 1	1.360
	CRR073307	Third green 2	1.680
	CRR073308	Third green 3	1.747
	CRR073309	Second white 1	2.216
	CRR073310	Second white 2	1.753
	CRR073311	Second white 3	2.328
	CRR073312	Silver flowering 1	3.248
	CRR073313	Silver flowering 2	3.457
	CRR073314	Silver flowering 3	0.914
	CRR073315	Gold flowering 1	8.180
	CRR073316	Gold flowering 2	10.951
	CRR073317	Gold flowering 3	14.270
	CRR073318	Tawny withering 1	13.440
	CRR073319	Tawny withering 2	11.149
	CRR073320	Tawny withering 3	10.647