Detail information of GWHGAAZE018846


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009787114.11.27406E-76PREDICTED: E3 ubiquitin-protein ligase RNF170-like isoform X1 [Nicotiana sylvestris]
trEMBLtr|M1C761|M1C761_SOLTU8E-75Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400061164}
TAIR10AT4G33940.11E-38RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2543469725441019-
GWHAAZE00000005mRNA2543469725441019-
GWHAAZE00000005exon2544066225441019-
GWHAAZE00000005exon2543943925439635-
GWHAAZE00000005exon2543732525437453-
GWHAAZE00000005exon2543679025436888-
GWHAAZE00000005exon2543597825436029-
GWHAAZE00000005exon2543525825435389-
GWHAAZE00000005exon2543469725435132-
GWHAAZE00000005CDS2544066225441019-
GWHAAZE00000005CDS2543943925439635-
GWHAAZE00000005CDS2543732525437453-
GWHAAZE00000005CDS2543679025436888-
GWHAAZE00000005CDS2543597825436029-
GWHAAZE00000005CDS2543525925435389-
GWHAAZE00000005three_prime_UTR2543525825435258-
GWHAAZE00000005three_prime_UTR2543469725435132-
Transcript Sequence

Network for GWHGAAZE018846

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13445.7zf-RING_UBOX991392.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.526
SRR3591706second leaf9.862
SRR3591707mature leaf9.479
SRR3591708Shoot apex23.613
SRR3591709Stem26.191
SRR3591710White floral bud16.016
SRR3591711White flower12.806
SRR3591712Green floral bud14.232
SRR3591713Yellow flower8.012
SRP173429 SRR8316895Juvenile bud stage 17.458
SRR8316896Juvenile bud stage 16.255
SRR8316897Juvenile bud stage 14.351
SRR8316894Third green stage 5.603
SRR8316900Third green stage 12.789
SRR8316901Third green stage 12.546
SRR8316898Complete white stage 2.283
SRR8316899Complete white stage 19.128
SRR8316903Complete white stage 5.134
SRR8316902Silver flowering stage3.198
SRR8316904Silver flowering stage5.351
SRR8316905Silver flowering stage2.893
SRR8316906Gold flowering stage 4.753
SRR8316907Gold flowering stage 4.959
SRR8316908Gold flowering stage 8.307
SRP132670SRR6706286Control4.898
SRR6706287Light intensity 50%6.110
SRR6706288Light intensity 20%6.613
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.335
CNS0095593Slightly white alabastrum(diploid) 217.932
CNS0095594Slightly white alabastrum(diploid) 315.958
CNS0095595Whole white alabastrum(diploid) 213.926
CNS0095596Whole white alabastrum(diploid) 310.790
CNS0095597Whole white alabastrum(diploid) 410.297
CNS0095598Silvery flower (diploied) 128.059
CNS0095599Silvery flower (diploied) 219.344
CNS0095600Silvery flower (diploied) 312.949
CNS0095601Golden flower (diploid) 128.076
CNS0095602Golden flower (diploid) 223.339
CNS0095603Golden flower (diploid) 324.345
CNS0095604Slightly white alabastrum(tetraploid) 17.958
CNS0095605Slightly white alabastrum(tetraploid) 29.022
CNS0095606Slightly white alabastrum(tetraploid) 311.563
CNS0095607Whole white alabastrum(tetraploid) 18.305
CNS0095608Whole white alabastrum(tetraploid) 26.425
CNS0095609Whole white alabastrum(tetraploid) 37.984
CNS0095610Silvery flower (tetraploid) 16.555
CNS0095611Silvery flower (tetraploid) 210.025
CNS0095612Silvery flower (tetraploid) 31.261
CNS0095613Golden flower (tetraploid) 14.653
CNS0095614Golden flower (tetraploid) 26.562
CNS0095615Golden flower (tetraploid) 32.660
CRA001975CRR073297Stem 115.143
CRR073298Stem 212.204
CRR073299Stem 37.566
CRR073300Leaf 110.884
CRR073301Leaf 215.572
CRR073302Leaf 37.365
CRR073303Juvenile bud 17.424
CRR073304Juvenile bud 23.477
CRR073305Juvenile bud 36.290
CRR073306Third green 11.458
CRR073307Third green 21.103
CRR073308Third green 31.888
CRR073309Second white 10.169
CRR073310Second white 20.167
CRR073311Second white 30.126
CRR073312Silver flowering 10.047
CRR073313Silver flowering 20.124
CRR073314Silver flowering 30.236
CRR073315Gold flowering 13.020
CRR073316Gold flowering 24.607
CRR073317Gold flowering 32.378
CRR073318Tawny withering 19.946
CRR073319Tawny withering 210.451
CRR073320Tawny withering 315.970