Detail information of GWHGAAZE018848


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010658046.10PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Vitis vinifera]
Swissprottr|Q8L840|RQL4A_ARATH0ATP-dependent DNA helicase Q-like 4A
trEMBLtr|B9SXG0|B9SXG0_RICCO0DNA helicase hus2, putative {ECO:0000313|EMBL:EEF31710.1}
TAIR10AT1G10930.10DNA helicase (RECQl4A)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2544959925460413-
GWHAAZE00000005mRNA2544959925460413-
GWHAAZE00000005exon2546036725460413-
GWHAAZE00000005exon2545901025459183-
GWHAAZE00000005exon2545837725458434-
GWHAAZE00000005exon2545746725457889-
GWHAAZE00000005exon2545694825457121-
GWHAAZE00000005exon2545673025456860-
GWHAAZE00000005exon2545585325456225-
GWHAAZE00000005exon2545564025455771-
GWHAAZE00000005exon2545471325454799-
GWHAAZE00000005exon2545447925454606-
GWHAAZE00000005exon2545321325453333-
GWHAAZE00000005exon2545297525453126-
GWHAAZE00000005exon2545277425452909-
GWHAAZE00000005exon2545196125452084-
GWHAAZE00000005exon2545168825451881-
GWHAAZE00000005exon2545136125451489-
GWHAAZE00000005exon2545111825451276-
GWHAAZE00000005exon2545083025450910-
GWHAAZE00000005exon2545040925450570-
GWHAAZE00000005exon2545024725450302-
GWHAAZE00000005exon2544986625449998-
GWHAAZE00000005exon2544959925449727-
GWHAAZE00000005CDS2546036725460413-
GWHAAZE00000005CDS2545901025459183-
GWHAAZE00000005CDS2545837725458434-
GWHAAZE00000005CDS2545746725457889-
GWHAAZE00000005CDS2545694825457121-
GWHAAZE00000005CDS2545673025456860-
GWHAAZE00000005CDS2545585325456225-
GWHAAZE00000005CDS2545564025455771-
GWHAAZE00000005CDS2545471325454799-
GWHAAZE00000005CDS2545447925454606-
GWHAAZE00000005CDS2545321325453333-
GWHAAZE00000005CDS2545297525453126-
GWHAAZE00000005CDS2545277425452909-
GWHAAZE00000005CDS2545196125452084-
GWHAAZE00000005CDS2545168825451881-
GWHAAZE00000005CDS2545136125451489-
GWHAAZE00000005CDS2545111825451276-
GWHAAZE00000005CDS2545083025450910-
GWHAAZE00000005CDS2545040925450570-
GWHAAZE00000005CDS2545024725450302-
GWHAAZE00000005CDS2544986625449998-
GWHAAZE00000005CDS2544959925449727-
Transcript Sequence

Network for GWHGAAZE018848

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD4746423.30E-19
PF00271.32Helicase_C6807792.90E-14
PF16124.6RecQ_Zn_bind8198972.90E-14
PF09382.11RQC90310171.90E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10901BLM, RECQL3, SGS1 Homologous recombination map03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName
GO:0006260biological_processDNA replication
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0043138molecular_function3'-5' DNA helicase activity
GO:0004386molecular_functionhelicase activity
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.739
SRR3591706second leaf3.999
SRR3591707mature leaf3.588
SRR3591708Shoot apex14.981
SRR3591709Stem3.423
SRR3591710White floral bud2.368
SRR3591711White flower1.517
SRR3591712Green floral bud2.649
SRR3591713Yellow flower1.068
SRP173429 SRR8316895Juvenile bud stage 2.204
SRR8316896Juvenile bud stage 2.024
SRR8316897Juvenile bud stage 1.310
SRR8316894Third green stage 0.620
SRR8316900Third green stage 1.598
SRR8316901Third green stage 1.494
SRR8316898Complete white stage 0.256
SRR8316899Complete white stage 1.487
SRR8316903Complete white stage 0.501
SRR8316902Silver flowering stage0.286
SRR8316904Silver flowering stage0.853
SRR8316905Silver flowering stage0.284
SRR8316906Gold flowering stage 1.059
SRR8316907Gold flowering stage 0.538
SRR8316908Gold flowering stage 0.874
SRP132670SRR6706286Control1.441
SRR6706287Light intensity 50%1.666
SRR6706288Light intensity 20%1.717
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.880
CNS0095593Slightly white alabastrum(diploid) 20.643
CNS0095594Slightly white alabastrum(diploid) 30.570
CNS0095595Whole white alabastrum(diploid) 20.465
CNS0095596Whole white alabastrum(diploid) 30.471
CNS0095597Whole white alabastrum(diploid) 40.328
CNS0095598Silvery flower (diploied) 11.618
CNS0095599Silvery flower (diploied) 22.161
CNS0095600Silvery flower (diploied) 30.686
CNS0095601Golden flower (diploid) 11.129
CNS0095602Golden flower (diploid) 21.151
CNS0095603Golden flower (diploid) 30.798
CNS0095604Slightly white alabastrum(tetraploid) 11.701
CNS0095605Slightly white alabastrum(tetraploid) 21.053
CNS0095606Slightly white alabastrum(tetraploid) 34.511
CNS0095607Whole white alabastrum(tetraploid) 10.992
CNS0095608Whole white alabastrum(tetraploid) 20.971
CNS0095609Whole white alabastrum(tetraploid) 31.574
CNS0095610Silvery flower (tetraploid) 11.322
CNS0095611Silvery flower (tetraploid) 21.702
CNS0095612Silvery flower (tetraploid) 30.702
CNS0095613Golden flower (tetraploid) 10.431
CNS0095614Golden flower (tetraploid) 21.163
CNS0095615Golden flower (tetraploid) 31.140
CRA001975CRR073297Stem 12.504
CRR073298Stem 22.090
CRR073299Stem 31.823
CRR073300Leaf 11.270
CRR073301Leaf 21.035
CRR073302Leaf 30.418
CRR073303Juvenile bud 10.685
CRR073304Juvenile bud 20.165
CRR073305Juvenile bud 30.595
CRR073306Third green 10.087
CRR073307Third green 20.025
CRR073308Third green 30.039
CRR073309Second white 10.154
CRR073310Second white 20.352
CRR073311Second white 30.392
CRR073312Silver flowering 10.539
CRR073313Silver flowering 20.152
CRR073314Silver flowering 30.584
CRR073315Gold flowering 11.146
CRR073316Gold flowering 21.167
CRR073317Gold flowering 30.187
CRR073318Tawny withering 12.287
CRR073319Tawny withering 21.707
CRR073320Tawny withering 33.034