Detail information of GWHGAAZE018932


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007037697.10NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q8LKZ8|RPS2_ARATH4E-69Disease resistance protein RPS2
trEMBLtr|A0A061G5B7|A0A061G5B7_THECC0NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313|EMBL:EOY22199.1}
TAIR10AT4G27190.11E-51NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2736423727367532-
GWHAAZE00000005mRNA2736423727367532-
GWHAAZE00000005exon2736423727364428-
GWHAAZE00000005exon2736460827367532-
GWHAAZE00000005CDS2736460827367532-
GWHAAZE00000005CDS2736423727364428-
Transcript Sequence

Network for GWHGAAZE018932

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC1623993.40E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13459RPS2 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.123
SRR3591706second leaf0.081
SRR3591707mature leaf0.465
SRR3591708Shoot apex0.254
SRR3591709Stem0.176
SRR3591710White floral bud3.476
SRR3591711White flower4.841
SRR3591712Green floral bud8.192
SRR3591713Yellow flower3.398
SRP173429 SRR8316895Juvenile bud stage 1.040
SRR8316896Juvenile bud stage 1.618
SRR8316897Juvenile bud stage 0.373
SRR8316894Third green stage 0.699
SRR8316900Third green stage 1.260
SRR8316901Third green stage 1.381
SRR8316898Complete white stage 0.208
SRR8316899Complete white stage 1.587
SRR8316903Complete white stage 0.440
SRR8316902Silver flowering stage0.265
SRR8316904Silver flowering stage0.248
SRR8316905Silver flowering stage0.138
SRR8316906Gold flowering stage 1.421
SRR8316907Gold flowering stage 0.650
SRR8316908Gold flowering stage 0.803
SRP132670SRR6706286Control2.745
SRR6706287Light intensity 50%2.296
SRR6706288Light intensity 20%2.465
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.492
CNS0095593Slightly white alabastrum(diploid) 20.409
CNS0095594Slightly white alabastrum(diploid) 31.398
CNS0095595Whole white alabastrum(diploid) 20.908
CNS0095596Whole white alabastrum(diploid) 30.596
CNS0095597Whole white alabastrum(diploid) 40.756
CNS0095598Silvery flower (diploied) 10.662
CNS0095599Silvery flower (diploied) 20.471
CNS0095600Silvery flower (diploied) 30.695
CNS0095601Golden flower (diploid) 11.124
CNS0095602Golden flower (diploid) 20.820
CNS0095603Golden flower (diploid) 30.796
CNS0095604Slightly white alabastrum(tetraploid) 10.381
CNS0095605Slightly white alabastrum(tetraploid) 20.605
CNS0095606Slightly white alabastrum(tetraploid) 31.992
CNS0095607Whole white alabastrum(tetraploid) 10.223
CNS0095608Whole white alabastrum(tetraploid) 20.253
CNS0095609Whole white alabastrum(tetraploid) 31.128
CNS0095610Silvery flower (tetraploid) 10.586
CNS0095611Silvery flower (tetraploid) 20.848
CNS0095612Silvery flower (tetraploid) 30.439
CNS0095613Golden flower (tetraploid) 10.250
CNS0095614Golden flower (tetraploid) 20.346
CNS0095615Golden flower (tetraploid) 30.077
CRA001975CRR073297Stem 11.369
CRR073298Stem 21.619
CRR073299Stem 30.948
CRR073300Leaf 11.375
CRR073301Leaf 21.822
CRR073302Leaf 31.857
CRR073303Juvenile bud 11.725
CRR073304Juvenile bud 21.022
CRR073305Juvenile bud 31.288
CRR073306Third green 10.085
CRR073307Third green 20.142
CRR073308Third green 30.226
CRR073309Second white 10.143
CRR073310Second white 20.072
CRR073311Second white 30.047
CRR073312Silver flowering 10.109
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.158
CRR073315Gold flowering 10.302
CRR073316Gold flowering 21.181
CRR073317Gold flowering 30.347
CRR073318Tawny withering 11.583
CRR073319Tawny withering 22.314
CRR073320Tawny withering 30.256