Gene detail

Detail information of GWHGAAZE018990

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001234871.1	0	auxin response factor 1 [Solanum lycopersicum]
Swissprot	tr\|Q8L7G0\|ARFA_ARATH	1E-156	Auxin response factor 1
trEMBL	tr\|D9I2J0\|D9I2J0_SOLLC	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G59750.2	3E-133	auxin response factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28335493	28345057	-
GWHAAZE00000005	mRNA	28335493	28345057	-
GWHAAZE00000005	exon	28345012	28345057	-
GWHAAZE00000005	exon	28342210	28342322	-
GWHAAZE00000005	exon	28340851	28340943	-
GWHAAZE00000005	exon	28340673	28340729	-
GWHAAZE00000005	exon	28340359	28340511	-
GWHAAZE00000005	exon	28340154	28340238	-
GWHAAZE00000005	exon	28339513	28339543	-
GWHAAZE00000005	exon	28339208	28339372	-
GWHAAZE00000005	exon	28337792	28337911	-
GWHAAZE00000005	exon	28337629	28337704	-
GWHAAZE00000005	exon	28336859	28337027	-
GWHAAZE00000005	exon	28336033	28336757	-
GWHAAZE00000005	exon	28335493	28335867	-
GWHAAZE00000005	CDS	28345012	28345057	-
GWHAAZE00000005	CDS	28342210	28342322	-
GWHAAZE00000005	CDS	28340851	28340943	-
GWHAAZE00000005	CDS	28340673	28340729	-
GWHAAZE00000005	CDS	28340359	28340511	-
GWHAAZE00000005	CDS	28340154	28340238	-
GWHAAZE00000005	CDS	28339513	28339543	-
GWHAAZE00000005	CDS	28339208	28339372	-
GWHAAZE00000005	CDS	28337792	28337911	-
GWHAAZE00000005	CDS	28337629	28337704	-
GWHAAZE00000005	CDS	28336859	28337027	-
GWHAAZE00000005	CDS	28336033	28336757	-
GWHAAZE00000005	CDS	28335493	28335867	-

Transcript Sequence
>GWHTAAZE019012 ATGGCGCATATTGCTGCAGCTGACTTATCTGGAAGTTCTCACCTAGGAGCCTCAGATGCTTTGTACAAGGAACTGTGGCACTTATGTGCCGGACCGCTCGTCACTGTTCCTCATGCAGGGGAACGGGTTTATTACTTTCCTCAAGGTCACATGGAACAGTTTGAAGCATCAACACAGCCGGGATTTGATCAACAACTTCCATACAACTTACCAGCCAAAATACTCTGCAGAGTTATGAATGTTCAACTGCGGGCTGAACCAGAAACAGATGACGTTTTTGCAGAAATAACTCTGCAACCTGAATCAGATCAAGCTGAGGTCATAAGCCAAGATCCTCCACTTCCAGAACCTCAAAAATGCAATTTCCATTCATTTCGCAAGGCACTTACTGCATCTGATACAAGCAGTCATGGTGGATTCTCTGTACCTCTGAGACATGCAAATGATTGTTTGCCTCCGTTGGACATGTCTCAGCAGACACCCTCGCAAAAATTGATTGCCACTGATCTTCATGGCAAGGAATGGAAATTTCGTCATGTATTTCGAGGGAAGCCTCAGCGCCACTTACTCACTGCCAGGGGCGAAAATGGGGAGCTGCGCGTTGGAGTAAGGAGGCTTACAAGACAACCGAACAGTATGCCATCTTCTGGTATATCCAGTCAAACTTGGCATCTTTTTATTATTGCTGCTGCAAAACATGCTATTATGACTGGATCCCACTTTTCAGTTTACTACAAACCAAGAACATGTCAATCAGAGTTCATTGTAAGTCTTAACAAGTACCTTGAGGCTCGAAACTACAGGCTCTCTGTTGGTATGAAGTTTAAGATGAAATTTGAAGATGGGGACATCCCCGAAAGAAGTTTCAGTGGAACAATTGTTGAGGAAGGAGATAGTTCCCCATCGAGATGGCCTGATTCTGAGTGGAGATCCTTAAAGATTCAATGGGTTGAACCTTCATCAATATTGCGTCCAGACAGAGTTTCACCGTGGGAATTAGAGCCTCTTCTGGCATCAACTCCTTCAAATCCACAACCTCCACAAAGAAATAATAAATGGGCTCGACCGCAAGTTTTACCTTCACCCATGCCAGAGTGTTCTCCTATTGGAATGTGGAAATCCCAAGATGACCACCACCGCACATCATCTCTCTCTTTTTGCTGGCCCCCGCATGGAAGCGATGGTCATGGTGCCCATGTGGAGGAGCACGTGGTAAAACTGGTTCATGCGCAGGTGGTCGTGGAGCTGGCACCGGAGAGGCAGGAGCAGGTGCCTCCATCGACAATTTTACAGATCCCATCAGGGCTGGAGATGGATGTGACGACTCCCACCTGCAACGTTGGCAATGTGAGTCCAGATCAACCTACTTCCAGCTTCTTCCAGGGTGTCATCAGTGGCGGGAGGAGGGCTGATGGGGGTGGTGATGATGTGTCCGTGGACAGGCTGTCTGGTGCGAGAATCAGTCAGGGCTGGGGAGCTGATAGTGGGAGCAGGGCCACTCAACATTCCGTGGGAGCTCCGGTCTATTCCATGCATGGTTTTGATCACCTGTTGGAGCAGGTTTCTCCAGAGAATTACTGGGAGGGGATCCAGAGTGTGGAGGAGGCGGTGGAGAGGCGTGAGCAGGTGCCTCTGGCTAGGACAGAGGGAGCTACCACTTCTGTTCCAGTTCAGGCATTTAGATTGGGAGGATCGGGCGTTCCCTTGGTGGTGCCTCCTCTATGGCCTCAGCAGTTCCAGTTCATAGGCCTGGGGGTTGAGACCTTCCAAATTCCCCAGGTTCCAGGTCCCGGGACAGCTGTAACTCTTCCTCCGGAACTCGACGATCACGAGGTGATTCAAATTCGTTCTCAGGACCTAAGGGCTCTCTATGCGAGCTTCTGGTCCCCTTGGGCTTGGATGCTGTTCGGGTTAGGAAGAGATCCTCGACCTTCTGAGAGGGAGTACCGCACTTACTTGTCCCGGGACTTACCTGATCTCTACCTTTCTGGTGGCGGTTCAGCGGGAGCCTCACGGGGGGACCGTTCGGCATCTATTCAGCCTTCTGGCAATTGCTATTGCAATGGTGCTTCTCATCACCGTCTGGAAGCTACTGTTGCTGGTCGTTCTCCTACTTTAACCCAGTCCGAACCCAACAGAGCTCAAGACACAACTGCAGAGGGTACAGGAGAATGCAGCGCCCATGGGAAGCGCCCTAGGACTGATTAG

Network for GWHGAAZE018990

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	125	191	9.30E-09
PF06507.14	Auxin_resp	231	313	6.90E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.893
	SRR3591706	second leaf	4.275
	SRR3591707	mature leaf	4.667
	SRR3591708	Shoot apex	11.014
	SRR3591709	Stem	9.443
	SRR3591710	White floral bud	4.800
	SRR3591711	White flower	10.148
	SRR3591712	Green floral bud	4.375
	SRR3591713	Yellow flower	6.783
SRP173429	SRR8316895	Juvenile bud stage	3.925
	SRR8316896	Juvenile bud stage	6.003
	SRR8316897	Juvenile bud stage	1.724
	SRR8316894	Third green stage	2.126
	SRR8316900	Third green stage	3.510
	SRR8316901	Third green stage	4.040
	SRR8316898	Complete white stage	1.310
	SRR8316899	Complete white stage	4.497
	SRR8316903	Complete white stage	2.572
	SRR8316902	Silver flowering stage	2.359
	SRR8316904	Silver flowering stage	2.628
	SRR8316905	Silver flowering stage	1.424
	SRR8316906	Gold flowering stage	5.894
	SRR8316907	Gold flowering stage	6.547
	SRR8316908	Gold flowering stage	5.232
SRP132670	SRR6706286	Control	5.515
	SRR6706287	Light intensity 50%	5.455
	SRR6706288	Light intensity 20%	5.396
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.542
	CNS0095593	Slightly white alabastrum(diploid) 2	6.677
	CNS0095594	Slightly white alabastrum(diploid) 3	5.322
	CNS0095595	Whole white alabastrum(diploid) 2	3.222
	CNS0095596	Whole white alabastrum(diploid) 3	2.877
	CNS0095597	Whole white alabastrum(diploid) 4	4.267
	CNS0095598	Silvery flower (diploied) 1	5.295
	CNS0095599	Silvery flower (diploied) 2	3.934
	CNS0095600	Silvery flower (diploied) 3	5.428
	CNS0095601	Golden flower (diploid) 1	4.456
	CNS0095602	Golden flower (diploid) 2	5.949
	CNS0095603	Golden flower (diploid) 3	6.231
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.206
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.966
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.360
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.162
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.539
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.435
	CNS0095610	Silvery flower (tetraploid) 1	14.978
	CNS0095611	Silvery flower (tetraploid) 2	8.444
	CNS0095612	Silvery flower (tetraploid) 3	10.926
	CNS0095613	Golden flower (tetraploid) 1	13.133
	CNS0095614	Golden flower (tetraploid) 2	15.706
	CNS0095615	Golden flower (tetraploid) 3	11.278
CRA001975	CRR073297	Stem 1	5.359
	CRR073298	Stem 2	4.587
	CRR073299	Stem 3	2.283
	CRR073300	Leaf 1	5.229
	CRR073301	Leaf 2	4.847
	CRR073302	Leaf 3	1.663
	CRR073303	Juvenile bud 1	2.359
	CRR073304	Juvenile bud 2	1.159
	CRR073305	Juvenile bud 3	2.740
	CRR073306	Third green 1	1.305
	CRR073307	Third green 2	1.293
	CRR073308	Third green 3	1.065
	CRR073309	Second white 1	1.419
	CRR073310	Second white 2	2.821
	CRR073311	Second white 3	2.583
	CRR073312	Silver flowering 1	2.580
	CRR073313	Silver flowering 2	1.422
	CRR073314	Silver flowering 3	1.106
	CRR073315	Gold flowering 1	0.462
	CRR073316	Gold flowering 2	2.150
	CRR073317	Gold flowering 3	1.102
	CRR073318	Tawny withering 1	5.911
	CRR073319	Tawny withering 2	5.357
	CRR073320	Tawny withering 3	6.703