Gene detail

Detail information of GWHGAAZE018991

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP42511.1	0	hypothetical protein JCGZ_00308 [Jatropha curcas]
Swissprot	tr\|Q9LTY1\|MAD1_ARATH	2E-161	Mitotic spindle checkpoint protein MAD1 {ECO:0000303\|PubMed:22457071}
trEMBL	tr\|A0A067L203\|A0A067L203_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42511.1}
TAIR10	AT5G49880.1	3E-107	mitotic checkpoint family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28359282	28369624	+
GWHAAZE00000005	mRNA	28359282	28369624	+
GWHAAZE00000005	exon	28359282	28359455	+
GWHAAZE00000005	exon	28360898	28360997	+
GWHAAZE00000005	exon	28361212	28361372	+
GWHAAZE00000005	exon	28361513	28361593	+
GWHAAZE00000005	exon	28361707	28361904	+
GWHAAZE00000005	exon	28361989	28362081	+
GWHAAZE00000005	exon	28362373	28362486	+
GWHAAZE00000005	exon	28363952	28364199	+
GWHAAZE00000005	exon	28364776	28364947	+
GWHAAZE00000005	exon	28367217	28367324	+
GWHAAZE00000005	exon	28367763	28367925	+
GWHAAZE00000005	exon	28368644	28368731	+
GWHAAZE00000005	exon	28368809	28368878	+
GWHAAZE00000005	exon	28369062	28369190	+
GWHAAZE00000005	exon	28369460	28369498	+
GWHAAZE00000005	exon	28369583	28369624	+
GWHAAZE00000005	CDS	28359282	28359455	+
GWHAAZE00000005	CDS	28360898	28360997	+
GWHAAZE00000005	CDS	28361212	28361372	+
GWHAAZE00000005	CDS	28361513	28361593	+
GWHAAZE00000005	CDS	28361707	28361904	+
GWHAAZE00000005	CDS	28361989	28362081	+
GWHAAZE00000005	CDS	28362373	28362486	+
GWHAAZE00000005	CDS	28363952	28364199	+
GWHAAZE00000005	CDS	28364776	28364947	+
GWHAAZE00000005	CDS	28367217	28367324	+
GWHAAZE00000005	CDS	28367763	28367925	+
GWHAAZE00000005	CDS	28368644	28368731	+
GWHAAZE00000005	CDS	28368809	28368878	+
GWHAAZE00000005	CDS	28369062	28369190	+
GWHAAZE00000005	CDS	28369460	28369498	+
GWHAAZE00000005	CDS	28369583	28369624	+

Transcript Sequence
>GWHTAAZE019013 ATGATTCTGAGAACACCACCCCCGAGAAAACGGAGAGCCGATTCGGTTCCGCTCGACAATAGCCCTAACTCCGATCGCCGTCTCGTTATCTACGAGGATCGTCCGGTGCCACCGGAATCATCATCTCCTCAACCTTCCGAACACTTGCTCTGCACTTACCAATGCCGCCAAATGGTTAAATCGGAGTTTTTTGATGCATTAAGTAGTGCAGAGAAGCAAGCCCGTGATTCTCAATCCAAATTGGAGGCAGTGAATGATGATTTCTGCAAAGCTGAATCTGAGAGGAAGAAATTCCGAGATCAATTCTTCTATGCCGAGCAAGAACTTGCTGCTGCCAAAGGCCGTGAACAGGCACTGCAAGAGCAGCTCTTGAAAGATATCAACGATTCTCAAGAACGACTGAAAAAGCAAATACATTTGCACAGTGAACTTGAGCTCGATGCTTATCCATTGACACTTCTGGTATATGAAATGGGAATAGAACAATTTATGCCTCCTGCTGTGCAATATGGTAATGTAAAGCTCCAAAATGAAATCAATCTTCGCAAAAAGGCAGAGTCTGTAGCAGCTTCAGCTGAAGAAAAAGCAAGCCTTTTAGAGGGAAAATTAAGCCATATTTCTGAAAGCACAGAAAGAGAAAAATGTCGTCTTCAGAATGAGCTTGCACAGCTGAAACGTGAATCAAAATTTTCAGTTTCTCGAATTAGTGCAGATCTTGAAAGAATGGAATGCAGAGCTAACAACTCTGAGAAAGAATCGGTGCTATTGAAGGAGCAGCTGGAGGAACTTAGGAAGCGATTTACTGAGTGTCTGAACCAGAAGAGTGAAGCTGAGAAGAAACTATCCAGTTTAACATCTCAAGAGGTTCCTTCCACAGATAATGTATTGGTGAAGCATTTACAAGATGAGCTCAGAAGCTATGAGTCTGAAGTGCGTGAAGCCAGAAAATTAAGATCTTCCCATGAAAACATTGAGTTACTGAAGGAGAAATTATTGGAAGAAAGGGGCCGCAGAGAAAGATCAGAATCTGAACTACTTAAATTATCAGAGATCCAGTTGAGTGCAAAGAAGTTGGAGGATGAATTGTCTTCCTGGAGATCGATGATGGAGGACATCCCTGGGGTATCATGTGCTGATGATATACCTTTTAAGTTTGCAGCTCTGCAGAAAGAGGTGATTGAAAGTATGAGGAAGGTGGGTGAGGTCAATGCACGCTTGAAACAAATGGAAGTTGCTCTGGACGATGCAGAACTTGCTAAACAGAACGCTGAAACTGAAGCTGCTTTGGCCAAGGAGAAGGCAGCTCTGTCAATCTCGGAGGTCAAGAGGATTGAATTGATGCTTTCTTCTGTTACCGAAGAAAGAGATCGGTTGAAAAATGTTGTTGATGAGTTGAAGAAGCACAACACTGAAACAGGGGCTGAAATAGCTGGCGGAACCCTTCTTCAGTTGGGTCATGGGGATTTTTCAGCCGCAAGTACAAAAGTTCTGAGAATGGTGAATACTTTAGCAGTTGACAATGACACAAAACAAACAATAGAGGCTCTACAAACTGAGTTACAGAAGACAAAAGAGAAGTTACAAGCTGTTGAAGAACTAAAAAAGCAGTCAGGGGATGCTGGGATGGTAGACTCATACATTTCTGGAAAAATTGTGCAGTTAAAAGAGCAAATTGCGACGCTTGAGAAACGTGAAGAAAGATACAAGACAGTGTTTGCTGATAGAATCTCGGTGTTCAGAAGGGCTTGCTGTGAACTTTTTGGTTACAAGATTGTAATGGATGATCACCAGCGTTCAGATGGAATTCCAGTTACACGTTTTACCCTCCAATCTATTTATGCTCAAAGCGATGATGAGAAGCTTCAATTTGAATATGAATCAGGGAATACAAACATTTTGGCAAATGATTACACCTCACAGCCCGAGATATCCCATCAGTTCCGTTTGAGACAAAATATACTTTGGTGGTTTTTTCCTTAG

Network for GWHGAAZE018991

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05557.14	MAD	392	638	1.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06679	MAD1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0007094	biological_process	mitotic spindle assembly checkpoint

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.117
	SRR3591706	second leaf	7.868
	SRR3591707	mature leaf	9.702
	SRR3591708	Shoot apex	16.871
	SRR3591709	Stem	15.262
	SRR3591710	White floral bud	9.067
	SRR3591711	White flower	11.405
	SRR3591712	Green floral bud	11.117
	SRR3591713	Yellow flower	11.443
SRP173429	SRR8316895	Juvenile bud stage	10.603
	SRR8316896	Juvenile bud stage	13.192
	SRR8316897	Juvenile bud stage	6.916
	SRR8316894	Third green stage	5.811
	SRR8316900	Third green stage	14.850
	SRR8316901	Third green stage	15.637
	SRR8316898	Complete white stage	6.722
	SRR8316899	Complete white stage	23.444
	SRR8316903	Complete white stage	10.941
	SRR8316902	Silver flowering stage	5.887
	SRR8316904	Silver flowering stage	10.948
	SRR8316905	Silver flowering stage	5.062
	SRR8316906	Gold flowering stage	13.274
	SRR8316907	Gold flowering stage	13.750
	SRR8316908	Gold flowering stage	9.688
SRP132670	SRR6706286	Control	11.609
	SRR6706287	Light intensity 50%	11.539
	SRR6706288	Light intensity 20%	12.506
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.112
	CNS0095593	Slightly white alabastrum(diploid) 2	7.457
	CNS0095594	Slightly white alabastrum(diploid) 3	8.470
	CNS0095595	Whole white alabastrum(diploid) 2	9.005
	CNS0095596	Whole white alabastrum(diploid) 3	7.685
	CNS0095597	Whole white alabastrum(diploid) 4	7.856
	CNS0095598	Silvery flower (diploied) 1	9.238
	CNS0095599	Silvery flower (diploied) 2	8.432
	CNS0095600	Silvery flower (diploied) 3	15.301
	CNS0095601	Golden flower (diploid) 1	8.142
	CNS0095602	Golden flower (diploid) 2	12.749
	CNS0095603	Golden flower (diploid) 3	11.372
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.380
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.055
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.999
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.674
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.017
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.533
	CNS0095610	Silvery flower (tetraploid) 1	13.055
	CNS0095611	Silvery flower (tetraploid) 2	12.109
	CNS0095612	Silvery flower (tetraploid) 3	9.204
	CNS0095613	Golden flower (tetraploid) 1	7.592
	CNS0095614	Golden flower (tetraploid) 2	12.059
	CNS0095615	Golden flower (tetraploid) 3	8.941
CRA001975	CRR073297	Stem 1	13.488
	CRR073298	Stem 2	11.126
	CRR073299	Stem 3	11.736
	CRR073300	Leaf 1	13.954
	CRR073301	Leaf 2	12.641
	CRR073302	Leaf 3	8.768
	CRR073303	Juvenile bud 1	12.666
	CRR073304	Juvenile bud 2	9.641
	CRR073305	Juvenile bud 3	11.248
	CRR073306	Third green 1	8.396
	CRR073307	Third green 2	6.552
	CRR073308	Third green 3	7.485
	CRR073309	Second white 1	5.136
	CRR073310	Second white 2	9.887
	CRR073311	Second white 3	9.178
	CRR073312	Silver flowering 1	5.080
	CRR073313	Silver flowering 2	3.560
	CRR073314	Silver flowering 3	5.104
	CRR073315	Gold flowering 1	5.801
	CRR073316	Gold flowering 2	12.303
	CRR073317	Gold flowering 3	4.073
	CRR073318	Tawny withering 1	11.789
	CRR073319	Tawny withering 2	8.804
	CRR073320	Tawny withering 3	12.593