Detail information of GWHGAAZE018996


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003633412.13.3534E-119PREDICTED: zinc-finger homeodomain protein 4 [Vitis vinifera]
Swissprottr|O64722|ZHD3_ARATH2E-69Zinc-finger homeodomain protein 3
trEMBLtr|F6HJZ6|F6HJZ6_VITVI1E-119Putative uncharacterized protein {ECO:0000313|EMBL:CCB54999.1}
TAIR10AT1G14440.27E-56homeobox protein 31

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2853196428532707-
GWHAAZE00000005mRNA2853196428532707-
GWHAAZE00000005exon2853234328532707-
GWHAAZE00000005exon2853196428532282-
GWHAAZE00000005CDS2853234328532707-
GWHAAZE00000005CDS2853196428532282-
Transcript Sequence

Network for GWHGAAZE018996

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04770.13ZF-HD_dimer36882.80E-28
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors Familyzf-HD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.333
SRR3591706second leaf18.044
SRR3591707mature leaf2.654
SRR3591708Shoot apex45.369
SRR3591709Stem0.000
SRR3591710White floral bud1.152
SRR3591711White flower2.273
SRR3591712Green floral bud2.552
SRR3591713Yellow flower2.456
SRP173429 SRR8316895Juvenile bud stage 3.942
SRR8316896Juvenile bud stage 3.583
SRR8316897Juvenile bud stage 2.814
SRR8316894Third green stage 0.731
SRR8316900Third green stage 0.334
SRR8316901Third green stage 0.288
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.337
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.296
SRP132670SRR6706286Control0.505
SRR6706287Light intensity 50%0.372
SRR6706288Light intensity 20%0.234
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.278
CNS0095593Slightly white alabastrum(diploid) 24.319
CNS0095594Slightly white alabastrum(diploid) 34.989
CNS0095595Whole white alabastrum(diploid) 20.293
CNS0095596Whole white alabastrum(diploid) 30.854
CNS0095597Whole white alabastrum(diploid) 40.253
CNS0095598Silvery flower (diploied) 10.806
CNS0095599Silvery flower (diploied) 20.450
CNS0095600Silvery flower (diploied) 30.263
CNS0095601Golden flower (diploid) 10.489
CNS0095602Golden flower (diploid) 20.544
CNS0095603Golden flower (diploid) 30.367
CNS0095604Slightly white alabastrum(tetraploid) 12.541
CNS0095605Slightly white alabastrum(tetraploid) 22.450
CNS0095606Slightly white alabastrum(tetraploid) 38.488
CNS0095607Whole white alabastrum(tetraploid) 10.887
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.773
CNS0095610Silvery flower (tetraploid) 11.054
CNS0095611Silvery flower (tetraploid) 21.641
CNS0095612Silvery flower (tetraploid) 31.510
CNS0095613Golden flower (tetraploid) 12.040
CNS0095614Golden flower (tetraploid) 23.133
CNS0095615Golden flower (tetraploid) 31.085
CRA001975CRR073297Stem 116.006
CRR073298Stem 29.885
CRR073299Stem 319.718
CRR073300Leaf 10.477
CRR073301Leaf 21.168
CRR073302Leaf 32.500
CRR073303Juvenile bud 10.046
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.073
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.030
CRR073314Silver flowering 30.000
CRR073315Gold flowering 13.700
CRR073316Gold flowering 24.682
CRR073317Gold flowering 34.771
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000