Gene detail

Detail information of GWHGAAZE019005

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN80770.1	3.90606E-53	hypothetical protein VITISV_013867 [Vitis vinifera]
Swissprot	tr\|Q9M2B4\|ALFL3_ARATH	1E-46	PHD finger protein ALFIN-LIKE 3, N-terminally processed
trEMBL	tr\|A5B4C8\|A5B4C8_VITVI	1E-53	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80770.1}
TAIR10	AT1G14510.1	8E-35	alfin-like 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	29116091	29119791	+
GWHAAZE00000005	mRNA	29116091	29119791	+
GWHAAZE00000005	exon	29116091	29116279	+
GWHAAZE00000005	exon	29117207	29117280	+
GWHAAZE00000005	exon	29118524	29118653	+
GWHAAZE00000005	exon	29119510	29119791	+
GWHAAZE00000005	CDS	29116091	29116279	+
GWHAAZE00000005	CDS	29117207	29117280	+
GWHAAZE00000005	CDS	29118524	29118653	+
GWHAAZE00000005	CDS	29119510	29119791	+

Transcript Sequence
>GWHTAAZE019027 ATGTTTTCTTTTACTTTTTCTCCCATAAATTCACAGCAACAGCAGCTGGTCTTCCGTTTCTTAATCCGTACAAGAGCTTCAGATTTTAGCCATGGCGTAAATTTTGCTGTTGTTGGTTCTACGGCGCAACCTATACATGTTTTGGCTGAAAAGAACATTTCATCCCCGGTCACTCCTAGTTCTCTCAACGCGCCACAGGCTGTACGGTTTCCTCAGTCCCAACCTAGTAGATATGATGTCTTAGATATAAGTTACAACACCATGAAGAGGCTATTTCAGATGATAAATGATCTCCCAACTGTATTTGAAGTTGTGACAGGAAAGGTTAATCCATCAAAGGACCAGCCTGCTACTAAGAAAAACGGAAACAAAAGCAAATCAAGTGGGAAGACGTCTCGGTCATCAGAGCCCAAGGGAGCAAGAGCATTGCAGCCACCTACTGATCAAGAAGACGAGACTGGTGAGGAGGAAGAAGACGGGGAAGAACAGGGAGCAGCCCTATGCGGAGCTTGTGGGGATAACGATGGTGAAGATCCCTTCTGGATTTGCTGCGATGTTTGTGAGAGGTGGTTCCACGGAAAATGTGTAAAGATAACACCTGCCAAAGCTGAGCATATCAAGCATTACAAGTGCCCTATTTGCACTAGCAACAAGAAGGCAAGACATCAGTTCTAA

Network for GWHGAAZE019005

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.30	PHD	168	216	6.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.820
	SRR3591706	second leaf	32.621
	SRR3591707	mature leaf	44.614
	SRR3591708	Shoot apex	39.052
	SRR3591709	Stem	34.874
	SRR3591710	White floral bud	41.473
	SRR3591711	White flower	54.398
	SRR3591712	Green floral bud	43.614
	SRR3591713	Yellow flower	50.873
SRP173429	SRR8316895	Juvenile bud stage	14.532
	SRR8316896	Juvenile bud stage	20.545
	SRR8316897	Juvenile bud stage	6.147
	SRR8316894	Third green stage	6.800
	SRR8316900	Third green stage	21.450
	SRR8316901	Third green stage	21.155
	SRR8316898	Complete white stage	7.988
	SRR8316899	Complete white stage	29.446
	SRR8316903	Complete white stage	13.922
	SRR8316902	Silver flowering stage	11.536
	SRR8316904	Silver flowering stage	10.158
	SRR8316905	Silver flowering stage	7.796
	SRR8316906	Gold flowering stage	16.535
	SRR8316907	Gold flowering stage	17.826
	SRR8316908	Gold flowering stage	13.765
SRP132670	SRR6706286	Control	26.519
	SRR6706287	Light intensity 50%	27.197
	SRR6706288	Light intensity 20%	26.099
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.501
	CNS0095593	Slightly white alabastrum(diploid) 2	28.297
	CNS0095594	Slightly white alabastrum(diploid) 3	24.790
	CNS0095595	Whole white alabastrum(diploid) 2	23.082
	CNS0095596	Whole white alabastrum(diploid) 3	22.058
	CNS0095597	Whole white alabastrum(diploid) 4	20.592
	CNS0095598	Silvery flower (diploied) 1	21.670
	CNS0095599	Silvery flower (diploied) 2	19.721
	CNS0095600	Silvery flower (diploied) 3	18.630
	CNS0095601	Golden flower (diploid) 1	21.273
	CNS0095602	Golden flower (diploid) 2	23.421
	CNS0095603	Golden flower (diploid) 3	21.590
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.375
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.907
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.444
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.168
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.450
	CNS0095610	Silvery flower (tetraploid) 1	26.614
	CNS0095611	Silvery flower (tetraploid) 2	21.182
	CNS0095612	Silvery flower (tetraploid) 3	27.659
	CNS0095613	Golden flower (tetraploid) 1	26.140
	CNS0095614	Golden flower (tetraploid) 2	25.351
	CNS0095615	Golden flower (tetraploid) 3	24.147
CRA001975	CRR073297	Stem 1	20.725
	CRR073298	Stem 2	17.158
	CRR073299	Stem 3	19.342
	CRR073300	Leaf 1	16.551
	CRR073301	Leaf 2	22.117
	CRR073302	Leaf 3	18.623
	CRR073303	Juvenile bud 1	23.696
	CRR073304	Juvenile bud 2	16.739
	CRR073305	Juvenile bud 3	19.375
	CRR073306	Third green 1	14.854
	CRR073307	Third green 2	12.385
	CRR073308	Third green 3	10.147
	CRR073309	Second white 1	17.533
	CRR073310	Second white 2	13.008
	CRR073311	Second white 3	15.792
	CRR073312	Silver flowering 1	11.942
	CRR073313	Silver flowering 2	13.535
	CRR073314	Silver flowering 3	7.927
	CRR073315	Gold flowering 1	24.496
	CRR073316	Gold flowering 2	18.289
	CRR073317	Gold flowering 3	15.991
	CRR073318	Tawny withering 1	17.823
	CRR073319	Tawny withering 2	18.097
	CRR073320	Tawny withering 3	22.124