Gene detail

Detail information of GWHGAAZE019019

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037697.1	2.5774E-151	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|P60839\|DRL2_ARATH	4E-49	Probable disease resistance protein At1g12290
trEMBL	tr\|A0A061G5B7\|A0A061G5B7_THECC	1E-151	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22199.1}
TAIR10	AT1G12290.1	1E-45	Disease resistance protein (CC-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	29343052	29346312	-
GWHAAZE00000005	mRNA	29343052	29346312	-
GWHAAZE00000005	exon	29343052	29346312	-
GWHAAZE00000005	CDS	29343052	29346312	-

Transcript Sequence
>GWHTAAZE019041 ATGGCTGAGATAATCGGAGCAGGTGCTGGTGTGGTGTCGGCAATGGTGGCCGTCTACCAACTATTGCTGGACAAAATCGAAGCTTCAAAAGATTTGGAGGTGATATGCAAAAATTTGGATGAGGCTATGCAAATGCTGTGTGCAGCACGGGATGATCGCGAGCATATATTTAAGGCACACCGTTCAAGAAAGGAGCGAACCAAAACATACAGTGCCTGGCTTGGCAGGGTAATAAAGTTGGAAGGTGAAGTGAACCAAATGAAAGGGAAGTACGACAGCTGGCAAAAAAGAAAGATAAACATGTTAAAACTTTCTCGTTCAAAATTGGGTAAAGAGATGAAAATGAAGAGTTTAGAGGCCCTCAGTCTTTACAAGGAGGTCTTAACAGACATGTTAGTGGAAAGGGATCCCGAACCCGTTCTGAAGATGAACGCACCAAACATAAAAGAAGTGCCAACACATCAAAAGTATTTGGAATGGATATTACGTCATCTAAAAGACTCTAGAGTTAAAGGTATCAGAGTGTTGGGGCAGTTTGGTGTAGGGAAAACAGCGATCATGCAGAACTTGAATAACCACGAAGATGTAGCTAAGATGTTTGAATTAGTCATCTGGGTGAAGGTTTCAAATAACAGCAAGAATTTTAGCATCAGGGAAATGCAGGAAGATATTGCTACAAGATTGAAAGTTGATATGGAAGGCAAGGACAATTGTACAGATAGAATAAGAGACGAGCTAAAGGGAAAGAAGTGTTTGTTGCTTCTTGACAGTGTTAATGAAGACCTTGATTTAGAAAAAATTGGAATTCATCTTAGTGATGAAAGCGGCAGCAAGATAGTATTAACAACTAGGTTGAATCGTGTTTGTCACTCAATGGTGAACCGGGTGATCGAAATTGAAAGATTAAGTTATGAGGAAGCACGGGACATGTTTCAAAAGGTTTTGGGTCACTCAAGAACTTGGCGAGTTATGCCAGAAGTTATTGAATATTGTTACGGTCTTCCATTTTTAATACAAACAGTAGCAAGCGCCTTCAAAAATAGAAATACTGAAGAGAGCTGGGACATAGGGTTGAGTAATTTAAAATATTTTCCTGAGAAAGGAGATCCTTCCATTCAGATTGTGTATAAATATTTAGAATTTTGTTGTAATGAGTTGGAGGGCGTTCAAAAGGATTGCTTTCTTTATAGTGCATTGTTTTCAGAAGAGAGTGACATCAACACACATTGTTTATTGGATTGTTGGGTTGCTGAAGATTTGTGCGGCACTAACCAGGCACGTGCGTATGGACGTCAAATATTAGAGGAGCTTAAGACAATGTCATTACTCGAAGAAGGTCTGCGTGGCCATGGGGAAAATGTTAGGATGCACAAATTGATCCGGAAAGTGGCATTGGATAAGTTGTTAGCTGATGATAGACGTAAACATTTGGTGAAAACAAGTGCACTGTTGCAAGATCCCCCAAACGTTGAAGACTGGAACCACAAGGATCGAATTTCTTTGGTTGACAACAACCTAACAGTCATACCAGAATGCCCAGATTCTCCTTTCCTTTTCACACTTTTTCTACAGAAAAATCAAAGTTTGAACCTAATTCATCCTATTTTCTTTGAGAATATGGGAAATCTTTGGATTCTGAACCTGCAAAATACTGGAATTGCGTCACTCCCATCTTCATTATGGAAACTGAAACTTCTGAAAGTTCTTTATTTAAATGGTTGTACTAGGCTGTTGAAGCTTCCTTTTGAAATAAGAGAACTAGCAAGTCTCGAAGTGCTTGATATACGAGGCACCGGAGTCGAGATTATACACGAGCCTTTTCCCTATTCAAAAATTCAATTTGTTAGCTGGCTCATTCAGAAAGTAGTATTTAGAGAAGTCCATCCTCGCCCATGGACGCCCATCCCCAACATTGGGAGTCTGCCTCATCTGAAGCGTTTGTTGGTGTCCTTCAATAGTTTTGGCAATGAAAATGTTTCTCGACATGTTTTACATTTTCATAATGAGATCTCCAATATCCCTGCTACATTGGAAGAGCTGGTCATTGATGTGAATTCATACAAGAAATTTTGCAGCAAGATGATAAATGTTGTGAGAAATAGTGTAGCTACCATTAAAAATCTGACAACTCTCAAGTTTCTATTTAAAGATTGTGTTGAAGAAGTCATAAAGGTGGTGGCTGGTACTAAAAGAACCTACTTTCCCGAAGCCGGTGATCTTGCGAGTTTCCTCGAGAAGACAAACAACCTCAACTCAAAATTGTCCTTTGAAGTTTACATTGGCTGCTCTATCTCATCACATCAAATTCCTGAGATTAACCAATATCAGAGGTACTTGAAAATTTGCAACGCGCACTGCTGTGACCTTACCACCAGTGTTAGTGAGGTGCTTTCTAGATCCGATGCATTTGAATTGGTTAACCACTGTGAGCTTGAGCACATATCCCAGCTTGGAACCGCAAGCTTCGATGGGGTCAAAGGTTGTCTGGTTGAAGGCTGCAACAGAATTGCAGCAATAGCTGATGGTAACTGCCCCATGGACGGCCCACTGCTACCAAACTTACTAGAATTATACATGAAGAAATTGCCGCGATTGAAAAGCATATGGAGGGGTGGGCCCTTGAAGGTGGGCAGCCTGTCTAGTCTGAGGACCCTGCTAATTGAGGATTGCTTCGCAATTCAAGAGCTGTTCACTGATTCTGGGATCAGAGTCCTCCCAAATCTGAGGAAGCTAACGCTGGTTAATTTGCAAAATTTAACAAGCATTTGCACAAATTTCCCTTCTGACCAGTGGCCAGCCTTAGAAGAACTGAAGATACATGGGTGTCCCCTTTTAACCGGTTTACCCTTTGAAGACAAGAACGCGATGAAGCTGAGGGAGCTAATACTTCTCGATATGCCCAATTTAACAATTTGTGCAAAAGACTCGGTGAAGTGGCCGGCCTTAGAGAAGCTGAAGATACATGGTTGTTTCAGTTTGTCTTTGTTACCTTTGAGCAAATATAGCACAATGAATCTGAGGAAGTTAACACTTCTTGATCTGCCAAACTTAACAACTCTTTGCACAGCTGAGTCACTTGAGTGGTCTGCCTTAGAGAAGCTCAAGATACAAGGGTGTCCAAGTTTGACTGAGTTACCTTTTAAGCAAGGTAAGGCATTGAAGCTAAGATCAATTCAAGCATCACAAAAGTGGTGGGATGCACTGAAAGGGCTAGACTCTGAGGTCAAACAACGTCTTTATCAGGTTTACCGCTCCCTATGA

Network for GWHGAAZE019019

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	158	384	5.10E-33

Protein Sequence

>GWHPAAZE019030
MAEIIGAGAGVVSAMVAVYQLLLDKIEASKDLEVICKNLDEAMQMLCAARDDREHIFKAHRSRKERTKTYSAWLGRVIKLEGEVNQMKGKYDSWQKRKINMLKLSRSKLGKEMKMKSLEALSLYKEVLTDMLVERDPEPVLKMNAPNIKEVPTHQKYLEWILRHLKDSRVKGIRVLGQFGVGKTAIMQNLNNHEDVAKMFELVIWVKVSNNSKNFSIREMQEDIATRLKVDMEGKDNCTDRIRDELKGKKCLLLLDSVNEDLDLEKIGIHLSDESGSKIVLTTRLNRVCHSMVNRVIEIERLSYEEARDMFQKVLGHSRTWRVMPEVIEYCYGLPFLIQTVASAFKNRNTEESWDIGLSNLKYFPEKGDPSIQIVYKYLEFCCNELEGVQKDCFLYSALFSEESDINTHCLLDCWVAEDLCGTNQARAYGRQILEELKTMSLLEEGLRGHGENVRMHKLIRKVALDKLLADDRRKHLVKTSALLQDPPNVEDWNHKDRISLVDNNLTVIPECPDSPFLFTLFLQKNQSLNLIHPIFFENMGNLWILNLQNTGIASLPSSLWKLKLLKVLYLNGCTRLLKLPFEIRELASLEVLDIRGTGVEIIHEPFPYSKIQFVSWLIQKVVFREVHPRPWTPIPNIGSLPHLKRLLVSFNSFGNENVSRHVLHFHNEISNIPATLEELVIDVNSYKKFCSKMINVVRNSVATIKNLTTLKFLFKDCVEEVIKVVAGTKRTYFPEAGDLASFLEKTNNLNSKLSFEVYIGCSISSHQIPEINQYQRYLKICNAHCCDLTTSVSEVLSRSDAFELVNHCELEHISQLGTASFDGVKGCLVEGCNRIAAIADGNCPMDGPLLPNLLELYMKKLPRLKSIWRGGPLKVGSLSSLRTLLIEDCFAIQELFTDSGIRVLPNLRKLTLVNLQNLTSICTNFPSDQWPALEELKIHGCPLLTGLPFEDKNAMKLRELILLDMPNLTICAKDSVKWPALEKLKIHGCFSLSLLPLSKYSTMNLRKLTLLDLPNLTTLCTAESLEWSALEKLKIQGCPSLTELPFKQGKALKLRSIQASQKWWDALKGLDSEVKQRLYQVYRSL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.171
	SRR3591706	second leaf	2.166
	SRR3591707	mature leaf	3.889
	SRR3591708	Shoot apex	2.619
	SRR3591709	Stem	2.629
	SRR3591710	White floral bud	1.291
	SRR3591711	White flower	1.355
	SRR3591712	Green floral bud	1.227
	SRR3591713	Yellow flower	1.515
SRP173429	SRR8316895	Juvenile bud stage	1.447
	SRR8316896	Juvenile bud stage	1.664
	SRR8316897	Juvenile bud stage	1.189
	SRR8316894	Third green stage	0.717
	SRR8316900	Third green stage	0.800
	SRR8316901	Third green stage	0.983
	SRR8316898	Complete white stage	0.191
	SRR8316899	Complete white stage	2.375
	SRR8316903	Complete white stage	0.478
	SRR8316902	Silver flowering stage	0.652
	SRR8316904	Silver flowering stage	1.003
	SRR8316905	Silver flowering stage	0.326
	SRR8316906	Gold flowering stage	2.239
	SRR8316907	Gold flowering stage	1.226
	SRR8316908	Gold flowering stage	1.951
SRP132670	SRR6706286	Control	1.204
	SRR6706287	Light intensity 50%	1.105
	SRR6706288	Light intensity 20%	1.185
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.752
	CNS0095593	Slightly white alabastrum(diploid) 2	0.595
	CNS0095594	Slightly white alabastrum(diploid) 3	0.645
	CNS0095595	Whole white alabastrum(diploid) 2	0.708
	CNS0095596	Whole white alabastrum(diploid) 3	0.539
	CNS0095597	Whole white alabastrum(diploid) 4	0.448
	CNS0095598	Silvery flower (diploied) 1	1.432
	CNS0095599	Silvery flower (diploied) 2	1.514
	CNS0095600	Silvery flower (diploied) 3	1.177
	CNS0095601	Golden flower (diploid) 1	1.686
	CNS0095602	Golden flower (diploid) 2	2.181
	CNS0095603	Golden flower (diploid) 3	1.860
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.834
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.517
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.299
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.409
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.100
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.049
	CNS0095610	Silvery flower (tetraploid) 1	1.840
	CNS0095611	Silvery flower (tetraploid) 2	1.856
	CNS0095612	Silvery flower (tetraploid) 3	1.177
	CNS0095613	Golden flower (tetraploid) 1	0.747
	CNS0095614	Golden flower (tetraploid) 2	0.889
	CNS0095615	Golden flower (tetraploid) 3	1.099
CRA001975	CRR073297	Stem 1	2.331
	CRR073298	Stem 2	2.040
	CRR073299	Stem 3	1.272
	CRR073300	Leaf 1	1.557
	CRR073301	Leaf 2	1.424
	CRR073302	Leaf 3	1.215
	CRR073303	Juvenile bud 1	0.832
	CRR073304	Juvenile bud 2	1.001
	CRR073305	Juvenile bud 3	1.069
	CRR073306	Third green 1	0.251
	CRR073307	Third green 2	0.105
	CRR073308	Third green 3	0.467
	CRR073309	Second white 1	0.111
	CRR073310	Second white 2	0.246
	CRR073311	Second white 3	0.473
	CRR073312	Silver flowering 1	0.313
	CRR073313	Silver flowering 2	0.287
	CRR073314	Silver flowering 3	0.119
	CRR073315	Gold flowering 1	2.685
	CRR073316	Gold flowering 2	4.945
	CRR073317	Gold flowering 3	1.604
	CRR073318	Tawny withering 1	3.090
	CRR073319	Tawny withering 2	2.579
	CRR073320	Tawny withering 3	1.166