Detail information of GWHGAAZE019057


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009630811.12.69254E-18PREDICTED: F-box protein At2g26160-like, partial [Nicotiana tomentosiformis]
Swissprottr|O65451|FB333_ARATH0.00000001Probable F-box protein At4g22030
trEMBLtr|M1AKI2|M1AKI2_SOLTU2E-18Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400024688}
TAIR10AT4G22030.10.00000007F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3087942930879824-
GWHAAZE00000005mRNA3087942930879824-
GWHAAZE00000005exon3087942930879824-
GWHAAZE00000005CDS3087942930879824-
Transcript Sequence

Network for GWHGAAZE019057

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box8543.10E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.692
SRR3591706second leaf0.000
SRR3591707mature leaf0.295
SRR3591708Shoot apex1.951
SRR3591709Stem1.203
SRR3591710White floral bud0.767
SRR3591711White flower0.553
SRR3591712Green floral bud1.612
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.474
SRR8316896Juvenile bud stage 0.785
SRR8316897Juvenile bud stage 0.057
SRR8316894Third green stage 0.527
SRR8316900Third green stage 1.771
SRR8316901Third green stage 1.215
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.653
SRR8316903Complete white stage 0.129
SRR8316902Silver flowering stage0.285
SRR8316904Silver flowering stage0.158
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.208
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.844
SRR6706287Light intensity 50%1.273
SRR6706288Light intensity 20%0.937
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.444
CNS0095593Slightly white alabastrum(diploid) 20.032
CNS0095594Slightly white alabastrum(diploid) 30.767
CNS0095595Whole white alabastrum(diploid) 20.316
CNS0095596Whole white alabastrum(diploid) 31.341
CNS0095597Whole white alabastrum(diploid) 40.212
CNS0095598Silvery flower (diploied) 10.308
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.352
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.459
CNS0095603Golden flower (diploid) 30.617
CNS0095604Slightly white alabastrum(tetraploid) 10.226
CNS0095605Slightly white alabastrum(tetraploid) 20.403
CNS0095606Slightly white alabastrum(tetraploid) 30.373
CNS0095607Whole white alabastrum(tetraploid) 10.392
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.257
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.131
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.623
CRR073298Stem 21.102
CRR073299Stem 30.628
CRR073300Leaf 10.927
CRR073301Leaf 21.162
CRR073302Leaf 30.471
CRR073303Juvenile bud 10.746
CRR073304Juvenile bud 20.282
CRR073305Juvenile bud 31.070
CRR073306Third green 10.000
CRR073307Third green 20.153
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.120
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.310
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.297
CRR073318Tawny withering 10.492
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000