Gene detail

Detail information of GWHGAAZE019065

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009770880.1	PREDICTED: endoglucanase 25-like [Nicotiana sylvestris]
Swissprot	tr\|Q38890\|GUN25_ARATH	Endoglucanase 25
trEMBL	tr\|A0A068F1W1\|A0A068F1W1_GOSHI	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT5G49720.1	glycosyl hydrolase 9A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	31027354	31035462	+
GWHAAZE00000005	mRNA	31027354	31035462	+
GWHAAZE00000005	exon	31027354	31027732	+
GWHAAZE00000005	exon	31030731	31031041	+
GWHAAZE00000005	exon	31032570	31033025	+
GWHAAZE00000005	exon	31033802	31033937	+
GWHAAZE00000005	exon	31034031	31034203	+
GWHAAZE00000005	exon	31034857	31035462	+
GWHAAZE00000005	CDS	31027354	31027732	+
GWHAAZE00000005	CDS	31030731	31031041	+
GWHAAZE00000005	CDS	31032570	31033025	+
GWHAAZE00000005	CDS	31033802	31033937	+
GWHAAZE00000005	CDS	31034031	31034203	+
GWHAAZE00000005	CDS	31034857	31035336	+
GWHAAZE00000005	three_prime_UTR	31035337	31035462	+

Transcript Sequence
>GWHTAAZE019087 ATGAGTATGTACGGTAGAGACCCGTGGGGTGGGGCGTTGGAGATAAACGCCGGCGACTCGGCCACCGACGATGACCGGAGCCGGAACTTAAATGACTTCGACCGGGCTGCACTTTCGCGGCCGCTGGACGAGACCCAGCAGAGCTGGCTGCTGGGTCCCGGGGAGCAGAAGAAGAAAAAGTACGTGGATCTGGGTTGTGTTATTGTGAGCCGTCAGATCTTTATATGGACGGTGGGGGTTATTCTTGCTGCTGGGTTTATTGCTGGGCTTGCGGTACTGATTGTGAAAACGGTGCCGAAGCACCACAAGGGGCATCCGCCGCCGGATAATTACACGGTGGCGTTGCATAAAGCGCTTATGTTCTTCAATGCCCAGAGATCTGGAAAACTCCCTAAGCACAATAATGTTACATGGAGAGGGAACTCTTGTTTGAAAGACGGCAAATCTGACCCGTCAACCACCATGAAAGATCTGGTGGGTGGCTTCTATGATGCGGGTGATGCAATCAAGTTCAATTTTCCAGCATCTTTTGCTATGACCATGTTGAGTTGGAGTGTGATTGAATACAGTGCCAAATATGAAGCTGCTGGGGAGCTCAATCATGTTAAAGAGATCATTAAGTGGGGGACTGATTACTTTCTCAAGACTTTCAATCACTCTGCTGATACAATTGACCGGATCGCTGCACAGGTTGGACAAGGCGATACTTCGGGAGGGCCCACTCCTAATGATCATTACTGTTGGGTGCGCCCAGAGGACGTCGACTACCCCCGGCCCGTAACTGAATGTCATAGTTGCTCGGACCTTGCAGCCGAGATGGCTGCTGCTTTAGCCTCTGCATCGATTGTGTTCAAGGACAACAAGGCCTACTCACAGAAACTCGTGCATGGGGCTAGAACTCTGTTCAAGTTTTCTCGGGATCAGCGAGGAAGATATAGCGTGGGAAATGAGGCTTCGATTTTCTATAATTCCACCAGTTACTGGGATGAGTTTGTGTGGGGTGGAGCGTGGTTGTATTACGCGACCGGTAATTCTTCGTATCTTCAACTTGCTACTACTCGTGGGCTAGCCAAACATGCTGGTGCCTTTTGGGGAGGGCCAGATTATGGTGTACTTAGCTGGGACAACAAGCTTGCTGGCGCTCAAGTGCTCTTGACCCGTTTGAGATTGTTCTTAAGCCCGGGGTATCCCTATGAAGAAATTTTGAAGACATTTCACAACCAGACCAGCATAATCATGTGTTCTTACCTACCATATTTTACAAGCTTTAACAGAACGAGAGGTGGGTTGATCCAATTAAACCATGGGAGGCCTCAGCCTCTTCAGTATGTGGTCAATGCTGCCTTCTTGGCTACACTATATAGTGACTACCTTGATGCCGCAGATACTCCAGGATGGTACTGTGGACCCAATTTCTACTCTACTGATATCCTCCGTAAATTTGCTGAGACCCAGATTGACTACATACTTGGCAAAAACCCGCGAAAGATGAGCTACATTGTGGGTTTCGGCAACCACTATCCAAAACACGTTCACCACAGAGCTGCATCGATCCCCAAAAACAAGATCAGGTACAACTGCAAAGGCGGATGGAAGTGGAGGGACACCAAGAAACCCAATCCCAACACTATTATTGGAGCTATGGTAGCGGGCCCGGACCGGCACGACGGGTTCCATGACGTGCGGTCCAACTACAATTACACTGAGCCAACCCTAGCTGGCAATGCTGGCTTAGTGGCAGCCCTCGTGGCTCTTTCAGGTGACCGGACCACTCGGATCGACAAGAACACCATATTCTCCGCAGTCCCACCTATGTTTCCAACCCGCCACCTCCGCCGGCTCCATGGAAGCCGTGAGATGGTGACATTATCATGTTCCTTGATATGTACGAATTTAGGGGGTTGGGTGATTTTGGTGGGGTTGGATGGTAGATAGACACAATGAAGGTATAAAATTAACAGAAAATATGAAGATGGGCATGAGCACAATGAAGATGTAGTTGGGGGCTAGCTTGATGAAAAAATATTGGAGTGCCTTGGCTTTTCAAAATTTGTTATGTGC

Network for GWHGAAZE019065

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	111	582	1.00E-126

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.929
	SRR3591706	second leaf	57.336
	SRR3591707	mature leaf	61.077
	SRR3591708	Shoot apex	52.632
	SRR3591709	Stem	89.143
	SRR3591710	White floral bud	45.560
	SRR3591711	White flower	44.336
	SRR3591712	Green floral bud	39.317
	SRR3591713	Yellow flower	27.450
SRP173429	SRR8316895	Juvenile bud stage	34.944
	SRR8316896	Juvenile bud stage	43.039
	SRR8316897	Juvenile bud stage	19.651
	SRR8316894	Third green stage	13.123
	SRR8316900	Third green stage	36.779
	SRR8316901	Third green stage	41.264
	SRR8316898	Complete white stage	10.421
	SRR8316899	Complete white stage	62.205
	SRR8316903	Complete white stage	17.201
	SRR8316902	Silver flowering stage	8.715
	SRR8316904	Silver flowering stage	7.877
	SRR8316905	Silver flowering stage	3.384
	SRR8316906	Gold flowering stage	15.310
	SRR8316907	Gold flowering stage	16.396
	SRR8316908	Gold flowering stage	16.447
SRP132670	SRR6706286	Control	55.148
	SRR6706287	Light intensity 50%	53.633
	SRR6706288	Light intensity 20%	53.528
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.347
	CNS0095593	Slightly white alabastrum(diploid) 2	41.913
	CNS0095594	Slightly white alabastrum(diploid) 3	39.999
	CNS0095595	Whole white alabastrum(diploid) 2	34.949
	CNS0095596	Whole white alabastrum(diploid) 3	22.730
	CNS0095597	Whole white alabastrum(diploid) 4	31.226
	CNS0095598	Silvery flower (diploied) 1	47.697
	CNS0095599	Silvery flower (diploied) 2	43.593
	CNS0095600	Silvery flower (diploied) 3	42.943
	CNS0095601	Golden flower (diploid) 1	56.204
	CNS0095602	Golden flower (diploid) 2	59.442
	CNS0095603	Golden flower (diploid) 3	56.088
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.635
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.519
	CNS0095606	Slightly white alabastrum(tetraploid) 3	94.848
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.233
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.989
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.700
	CNS0095610	Silvery flower (tetraploid) 1	37.000
	CNS0095611	Silvery flower (tetraploid) 2	33.800
	CNS0095612	Silvery flower (tetraploid) 3	17.041
	CNS0095613	Golden flower (tetraploid) 1	9.541
	CNS0095614	Golden flower (tetraploid) 2	22.738
	CNS0095615	Golden flower (tetraploid) 3	4.391
CRA001975	CRR073297	Stem 1	49.791
	CRR073298	Stem 2	50.113
	CRR073299	Stem 3	60.754
	CRR073300	Leaf 1	51.430
	CRR073301	Leaf 2	54.938
	CRR073302	Leaf 3	49.435
	CRR073303	Juvenile bud 1	57.464
	CRR073304	Juvenile bud 2	40.530
	CRR073305	Juvenile bud 3	86.421
	CRR073306	Third green 1	13.459
	CRR073307	Third green 2	16.149
	CRR073308	Third green 3	18.796
	CRR073309	Second white 1	6.521
	CRR073310	Second white 2	5.515
	CRR073311	Second white 3	4.359
	CRR073312	Silver flowering 1	1.775
	CRR073313	Silver flowering 2	3.031
	CRR073314	Silver flowering 3	1.732
	CRR073315	Gold flowering 1	91.250
	CRR073316	Gold flowering 2	112.838
	CRR073317	Gold flowering 3	91.039
	CRR073318	Tawny withering 1	70.693
	CRR073319	Tawny withering 2	59.896
	CRR073320	Tawny withering 3	71.206