Detail information of GWHGAAZE019075


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17753.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068VDK6|A0A068VDK6_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_180 {ECO:0000313|EMBL:CDP17753.1}
TAIR10AT3G05940.18E-173Protein of unknown function (DUF300)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3130526631312962+
GWHAAZE00000005mRNA3130526631312962+
GWHAAZE00000005exon3130526631305412+
GWHAAZE00000005exon3130865431308727+
GWHAAZE00000005exon3130939831309547+
GWHAAZE00000005exon3131021631310546+
GWHAAZE00000005exon3131182531312058+
GWHAAZE00000005exon3131259731312962+
GWHAAZE00000005CDS3130526631305412+
GWHAAZE00000005CDS3130865431308727+
GWHAAZE00000005CDS3130939831309547+
GWHAAZE00000005CDS3131021631310546+
GWHAAZE00000005CDS3131182531312058+
GWHAAZE00000005CDS3131259731312962+
Transcript Sequence

Network for GWHGAAZE019075

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0112


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03619.17Solute_trans_a72816.30E-84
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf75.683
SRR3591706second leaf23.304
SRR3591707mature leaf26.281
SRR3591708Shoot apex35.100
SRR3591709Stem60.134
SRR3591710White floral bud38.863
SRR3591711White flower53.069
SRR3591712Green floral bud28.618
SRR3591713Yellow flower47.335
SRP173429 SRR8316895Juvenile bud stage 32.135
SRR8316896Juvenile bud stage 47.371
SRR8316897Juvenile bud stage 20.267
SRR8316894Third green stage 10.382
SRR8316900Third green stage 33.122
SRR8316901Third green stage 35.830
SRR8316898Complete white stage 18.352
SRR8316899Complete white stage 71.660
SRR8316903Complete white stage 29.402
SRR8316902Silver flowering stage23.219
SRR8316904Silver flowering stage33.046
SRR8316905Silver flowering stage15.773
SRR8316906Gold flowering stage 49.928
SRR8316907Gold flowering stage 42.672
SRR8316908Gold flowering stage 42.278
SRP132670SRR6706286Control20.779
SRR6706287Light intensity 50%23.115
SRR6706288Light intensity 20%24.656
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.315
CNS0095593Slightly white alabastrum(diploid) 242.723
CNS0095594Slightly white alabastrum(diploid) 327.628
CNS0095595Whole white alabastrum(diploid) 235.465
CNS0095596Whole white alabastrum(diploid) 318.552
CNS0095597Whole white alabastrum(diploid) 425.750
CNS0095598Silvery flower (diploied) 141.326
CNS0095599Silvery flower (diploied) 240.598
CNS0095600Silvery flower (diploied) 362.446
CNS0095601Golden flower (diploid) 132.460
CNS0095602Golden flower (diploid) 267.034
CNS0095603Golden flower (diploid) 359.617
CNS0095604Slightly white alabastrum(tetraploid) 123.103
CNS0095605Slightly white alabastrum(tetraploid) 217.756
CNS0095606Slightly white alabastrum(tetraploid) 345.352
CNS0095607Whole white alabastrum(tetraploid) 113.714
CNS0095608Whole white alabastrum(tetraploid) 212.889
CNS0095609Whole white alabastrum(tetraploid) 330.576
CNS0095610Silvery flower (tetraploid) 151.846
CNS0095611Silvery flower (tetraploid) 252.510
CNS0095612Silvery flower (tetraploid) 346.393
CNS0095613Golden flower (tetraploid) 134.793
CNS0095614Golden flower (tetraploid) 251.863
CNS0095615Golden flower (tetraploid) 370.165
CRA001975CRR073297Stem 131.236
CRR073298Stem 229.670
CRR073299Stem 330.389
CRR073300Leaf 140.288
CRR073301Leaf 236.141
CRR073302Leaf 329.023
CRR073303Juvenile bud 140.277
CRR073304Juvenile bud 226.989
CRR073305Juvenile bud 337.520
CRR073306Third green 123.777
CRR073307Third green 221.884
CRR073308Third green 323.293
CRR073309Second white 119.983
CRR073310Second white 224.637
CRR073311Second white 320.184
CRR073312Silver flowering 122.514
CRR073313Silver flowering 222.946
CRR073314Silver flowering 321.734
CRR073315Gold flowering 118.627
CRR073316Gold flowering 225.220
CRR073317Gold flowering 325.917
CRR073318Tawny withering 148.316
CRR073319Tawny withering 247.953
CRR073320Tawny withering 347.269