Gene detail

Detail information of GWHGAAZE019077

Functional Annotation

Database	Orthologs	Annotation
Nr	ACC60969.1	phytochrome A [Vitis riparia]
Swissprot	tr\|P33530\|PHYA1_TOBAC	Phytochrome A1
trEMBL	tr\|B9U4G6\|B9U4G6_VITRI	Phytochrome {ECO:0000256\|PIRNR:PIRNR000084}
TAIR10	AT1G09570.1	phytochrome A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	31354093	31359432	+
GWHAAZE00000005	mRNA	31354093	31359432	+
GWHAAZE00000005	exon	31354093	31356151	+
GWHAAZE00000005	exon	31356592	31357408	+
GWHAAZE00000005	exon	31358354	31358644	+
GWHAAZE00000005	exon	31359216	31359432	+
GWHAAZE00000005	CDS	31354093	31356151	+
GWHAAZE00000005	CDS	31356592	31357408	+
GWHAAZE00000005	CDS	31358354	31358644	+
GWHAAZE00000005	CDS	31359216	31359432	+

Transcript Sequence
>GWHTAAZE019099 ATGTCATCCTCAAGACCCAATCAGTCTTCCACCAATTCAGGGCGATCCAAACAGAATTCTAGGATTATCCAACAGACAACAGTAGACGCGAAGCTCCATGCCGATTTCGAGGAGTCGGGTAGTTCATTCGACTACTCGAGCTCAGTCCGTCTCACCGGCTCAGTTATTGGGGACCAACCACCTCGGTCCGACAAAGTAACCACAGCTTACCTTCATCACATACAAAAAGGCAAGCTAATCCAACCATTTGGCTCCTTGATAGCTCTAGACGACAAAACTTTCAAAGTCATCGCCTATAGTGAAAATGCACCGGAAATGCTAACCATGGTTAACCACGCGGTCCCAAGTGTCGGTGACCACCCGGTCCTTGGCATTGGAACCGATGTGAGAACCATCTTCACTGGGCCAAGTGCAACCGCTTTATATAAGGCCTTAGGATTTGGCGAGGTTTCTTTATTGAACCCGGTTTTAGTTCACTGCAAAACTTCTGGGAAGCCGTTTTATGCAATTGTGCATAGGGTGACGGGTAGTTTGATCATTGACTTCGAGCCGGTGAAGCCTTATGAAGTCCCTATGACTGCAGCTGGGGCCTTGCAGTCATACAAACTTGCTGCTAAAGCCATTACTCGGCTCCATTCTTTGCCTAGTGGGAGCATGGAGAGGCTTTGTGATACAATGGTTCAAGAGGTTTTCGAGCTCACTGGTTATGATCGGGTGATGGCTTATAAATTTCACGATGACGATCATGGTGAGGTCGTGTCTGAGACCACCAAGCCGGGGCTCGAGCCGTATCTCGGTTTACATTATCCGGCTACCGACATCCCTCAAGCCGCACGGTTTTTGTTCATGAAGAACAAGGTCCGTATGATCTGTGATTGCCGAGCCAAACATGTGAACGTGGTTCAAGACGACAATCTCTCGTTTGATTTAACCTTGTGTGGCTCGACTTTGCGGGCCCCACATAGTTGCCATTTACAGTATATGGAGAACATGAACTCGATAGCTTCTTTAGTAATGGCTGTTGTGGTTAATGACATGGATGAAGTCGGTGAGAGCTCTGATTCTACAAACCCCCAAAAGAGAAAAAAGCTCTGGGGGCTAGTAGTATGCCACAACACGTCCCCTAGGTTTGTCCCATTCCCACTTCGGTATGCATGTGAGTTTCTTGCTCAAGTTTTCGCCATACATGTCAACAAGGAGATCGAACTGGAAAACCAAATTGTCGAGAAGAATATCCTTCGAACCCAAACACTTTTGTGTGACTTGCTAATGCGAGATGCGCCACTTGGCATCGTCTCACAGAGCCCCAACATGATGGACCTCGTAAAATGTGACGGGGCAGCCTTGTTGTACAAAAATAAGATTTATCGAATGGGTGTCTCACCGAGTGACTATCAGCTTAAGGACATAGTTTCTTGGCTAACCGAGTACCATATGGACTCAACAGGTTTGAGCACCGATAGCTTGTACGATGCGGGGTTCCCTGGTGCACTTGCTCTCGGTGACATAGTGTGTGGGATGGCTGCAGTGAGGATAACTTCTAAAGACATGCTGTTCTGGTTCCGGTCCCACACGGCGGCCGAGGTCCGGTGGGGTGGGGCCAGGCACGAACACGGTGAGAAAGATGATGGCACAAAAATGCACCCAAGGTCTTCATTTAAAGCTTTCCTCGAAGTTGTGAAGACGAGGAGTATACCTTGGAAGGATTTTGAGATGGATGCTATACATTCTTTGCAGCTTATTCTAAGGAATGCTTTTAAGGAGAACGTTATGGCTATCGATTTGAATAGCAATGCTATCCATACAAGGCTCAATGACCTCAAGATTGAAGGTATGCAAGAACTTGAGGCGGTGACGAGTGAGATGGTTCGGTTGATTGAAACGGCTACGGTGCCTATCTTGGCCGTTGATGTGGATGGGGTGGTTAATGGGTGGAATACAAAGATTGCCGAGTTAACGGGTCTTCCTGTTAATGAAGCGATAGGGAGGCAGTTGCTGACCCTTGTTGAAGATTCATCTGTTCATACAGTGAAAAAGATGTTGGATTTTGCATTGCAAGGAAAAGAAGAACAAAACATCCAGTTCGAGATCAAAACACATGGTTCAAGAAGAGACTCGGGTCCAATCAGCTTAATCGTGAATGCTTGTGCTAGTAGGGATCTTGGTGAGAACGTTGTTGGTGTATGTTTTGTAGCCCAAGATATAACCGGTCAAAAGACTATCATGGACAAGTTCACTCGAATCGAAGGCGATTACAAAGCCATCATACAAAACCCAAGCCCATTGATCCCCCCAATATTTGGCACCGATGAATTCGGCTGGTGCTCCGAGTGGAACCAAGCAATGACCGAGCTATCCGGGCTAACTAGAGACAAGGTTATTGATAAAATGCTACTGGGTGAGGTTTTTGGGACCCACACGGCAGCTTGTCGTCTAAAGAATCAAGAAGCTTTTGTGAATCTTGGGATTGTACTAAACACTGCTATGACGGGTCAAGAATCTGAGAAAATTTCGTTTGGCTTTTTTACACGTAAGGGGAAGTATGTAGAGTGCCTTCTTTGTGTGAGCAAAAAGTTGGATGGAGAAGGTGCGATTACCGGGGTTTTTTGCTTCTTGCAGCTAGCTAGTCAAGAACTGCAGCAAGCGCTTCATATTCAAAGGTTATCAGAGCAAACTGCTGTGAAGAGATTGAAAGCGTTGGCCTACATAAGAAGGCAGGTGAAGAATCCTCTTTCGGGGATTATATTTTCTAGGAAAATGATGGAGGAGACTGAATTAGGAGAAGAACAGAAACAATTTATGAATGTTAGTGCCCAGTGCCAGCGGCAGCTCAACAAGATTCTTGATGATACAGATCTTGATTCAATCATTGACGGGTATTTGGATCTAGAAATGGTCGAGTTTTCTATCCAAGAAGTATTGGCTGCCTCCATTAGTCAAGTGATGTCGAGGAGCAATGGAAAGGGTATTCAAATAGTGAACAATATATCAGAAAACATCATGTCTGAGACCTTATACGGAGACGGCCTTAGGCTACAACAAGTGCTTGCTGATTTCTTGGTGATTTGCATTAATTTTACGCCAACTGGCGGCCATCTTGGCATCACGGCTAACTTGACCAAAGATCATTTGGGGCAATCCATCCGGCTTGTGAATGTAGAATTCAGGATAATGCATGCAGGAGGCGGGGTACCGGAGGACTTGTTGAGCCAGATGTTTGGAAGCAATGCGGAAACATCAGAGGAAGGGATCAGTTTGCTCATCAGTAGAAAGCTAGTGAAGCTAATGAATGGGGATGTTCAATATCTCAGGCAAGCCGGCCTCTCTACTTTCATTGTATCTGTCGAACTCGCCTCGGCCAATAAGCCGCCAACGGCTGCTTGA

Network for GWHGAAZE019077

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08446.12	PAS_2	69	185	1.80E-36
PF01590.27	GAF	218	401	2.30E-35
PF00360.21	PHY	414	588	1.10E-51
PF00989.26	PAS	621	735	1.20E-21
PF00989.26	PAS	751	873	9.00E-23
PF00512.26	HisKA	898	955	1.10E-06
PF02518.27	HATPase_c	1007	1117	1.80E-10

Protein Sequence

>GWHPAAZE019088
MSSSRPNQSSTNSGRSKQNSRIIQQTTVDAKLHADFEESGSSFDYSSSVRLTGSVIGDQPPRSDKVTTAYLHHIQKGKLIQPFGSLIALDDKTFKVIAYSENAPEMLTMVNHAVPSVGDHPVLGIGTDVRTIFTGPSATALYKALGFGEVSLLNPVLVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLHSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSETTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVNVVQDDNLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDMDEVGESSDSTNPQKRKKLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQSPNMMDLVKCDGAALLYKNKIYRMGVSPSDYQLKDIVSWLTEYHMDSTGLSTDSLYDAGFPGALALGDIVCGMAAVRITSKDMLFWFRSHTAAEVRWGGARHEHGEKDDGTKMHPRSSFKAFLEVVKTRSIPWKDFEMDAIHSLQLILRNAFKENVMAIDLNSNAIHTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGVVNGWNTKIAELTGLPVNEAIGRQLLTLVEDSSVHTVKKMLDFALQGKEEQNIQFEIKTHGSRRDSGPISLIVNACASRDLGENVVGVCFVAQDITGQKTIMDKFTRIEGDYKAIIQNPSPLIPPIFGTDEFGWCSEWNQAMTELSGLTRDKVIDKMLLGEVFGTHTAACRLKNQEAFVNLGIVLNTAMTGQESEKISFGFFTRKGKYVECLLCVSKKLDGEGAITGVFCFLQLASQELQQALHIQRLSEQTAVKRLKALAYIRRQVKNPLSGIIFSRKMMEETELGEEQKQFMNVSAQCQRQLNKILDDTDLDSIIDGYLDLEMVEFSIQEVLAASISQVMSRSNGKGIQIVNNISENIMSETLYGDGLRLQQVLADFLVICINFTPTGGHLGITANLTKDHLGQSIRLVNVEFRIMHAGGGVPEDLLSQMFGSNAETSEEGISLLISRKLVKLMNGDVQYLRQAGLSTFIVSVELASANKPPTAA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12120	PHYA	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009584	biological_process	detection of visible light
GO:0018298	biological_process	protein-chromophore linkage
GO:0009585	biological_process	red, far-red light phototransduction
GO:0017006	biological_process	protein-tetrapyrrole linkage
GO:0000155	molecular_function	phosphorelay sensor kinase activity
GO:0005515	molecular_function	protein binding
GO:0009881	molecular_function	photoreceptor activity
GO:0042803	molecular_function	protein homodimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.007
	SRR3591706	second leaf	3.395
	SRR3591707	mature leaf	2.674
	SRR3591708	Shoot apex	11.199
	SRR3591709	Stem	3.741
	SRR3591710	White floral bud	6.184
	SRR3591711	White flower	9.921
	SRR3591712	Green floral bud	7.394
	SRR3591713	Yellow flower	7.285
SRP173429	SRR8316895	Juvenile bud stage	7.269
	SRR8316896	Juvenile bud stage	9.231
	SRR8316897	Juvenile bud stage	4.020
	SRR8316894	Third green stage	4.939
	SRR8316900	Third green stage	11.380
	SRR8316901	Third green stage	9.758
	SRR8316898	Complete white stage	4.431
	SRR8316899	Complete white stage	14.992
	SRR8316903	Complete white stage	11.351
	SRR8316902	Silver flowering stage	4.712
	SRR8316904	Silver flowering stage	6.873
	SRR8316905	Silver flowering stage	1.328
	SRR8316906	Gold flowering stage	6.801
	SRR8316907	Gold flowering stage	13.056
	SRR8316908	Gold flowering stage	13.525
SRP132670	SRR6706286	Control	18.584
	SRR6706287	Light intensity 50%	18.496
	SRR6706288	Light intensity 20%	21.256
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.624
	CNS0095593	Slightly white alabastrum(diploid) 2	9.105
	CNS0095594	Slightly white alabastrum(diploid) 3	6.933
	CNS0095595	Whole white alabastrum(diploid) 2	7.040
	CNS0095596	Whole white alabastrum(diploid) 3	6.707
	CNS0095597	Whole white alabastrum(diploid) 4	7.530
	CNS0095598	Silvery flower (diploied) 1	3.288
	CNS0095599	Silvery flower (diploied) 2	3.748
	CNS0095600	Silvery flower (diploied) 3	15.952
	CNS0095601	Golden flower (diploid) 1	5.451
	CNS0095602	Golden flower (diploid) 2	18.706
	CNS0095603	Golden flower (diploid) 3	18.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.627
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.996
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.065
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.044
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.744
	CNS0095610	Silvery flower (tetraploid) 1	12.674
	CNS0095611	Silvery flower (tetraploid) 2	10.876
	CNS0095612	Silvery flower (tetraploid) 3	16.852
	CNS0095613	Golden flower (tetraploid) 1	18.556
	CNS0095614	Golden flower (tetraploid) 2	15.591
	CNS0095615	Golden flower (tetraploid) 3	45.476
CRA001975	CRR073297	Stem 1	15.508
	CRR073298	Stem 2	15.731
	CRR073299	Stem 3	15.648
	CRR073300	Leaf 1	17.117
	CRR073301	Leaf 2	13.284
	CRR073302	Leaf 3	13.308
	CRR073303	Juvenile bud 1	16.924
	CRR073304	Juvenile bud 2	14.799
	CRR073305	Juvenile bud 3	19.196
	CRR073306	Third green 1	0.585
	CRR073307	Third green 2	1.236
	CRR073308	Third green 3	2.256
	CRR073309	Second white 1	4.673
	CRR073310	Second white 2	5.092
	CRR073311	Second white 3	3.875
	CRR073312	Silver flowering 1	29.851
	CRR073313	Silver flowering 2	33.063
	CRR073314	Silver flowering 3	36.145
	CRR073315	Gold flowering 1	3.163
	CRR073316	Gold flowering 2	6.460
	CRR073317	Gold flowering 3	3.730
	CRR073318	Tawny withering 1	7.790
	CRR073319	Tawny withering 2	4.241
	CRR073320	Tawny withering 3	9.239