Gene detail

Detail information of GWHGAAZE019078

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278667.2	0	PREDICTED: probable glutamate--tRNA ligase, cytoplasmic isoform X1 [Vitis vinifera]
Swissprot	tr\|P52780\|SYQ_LUPLU	3E-65	Glutamine--tRNA ligase
trEMBL	tr\|F6I4J3\|F6I4J3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61977.1}
TAIR10	AT5G26710.1	0	Glutamyl/glutaminyl-tRNA synthetase, class Ic

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	31367592	31371820	+
GWHAAZE00000005	mRNA	31367592	31371820	+
GWHAAZE00000005	exon	31367592	31367729	+
GWHAAZE00000005	exon	31367860	31368013	+
GWHAAZE00000005	exon	31368498	31369627	+
GWHAAZE00000005	exon	31370526	31370993	+
GWHAAZE00000005	exon	31371602	31371820	+
GWHAAZE00000005	CDS	31367592	31367729	+
GWHAAZE00000005	CDS	31367860	31368013	+
GWHAAZE00000005	CDS	31368498	31369627	+
GWHAAZE00000005	CDS	31370526	31370993	+
GWHAAZE00000005	CDS	31371602	31371820	+

Transcript Sequence
>GWHTAAZE019100 ATAAAATTTAACGCTATATTTTATCTCAAATATGTATTCAGAATGAAGTTGCAAGGAACAAATGTGCTACTCCGATATCTTGGTCGGGTAGCAAGCGTTCCTAGTTTGTATCAGCGGGATGCCTTTGAATCTAGCCAGATCGATGAATGGCTGGAATATTCTTCTTTTCTTTCATCGGGTCCTGCATTTGAAGGCGCATGTAACTACATTGACGGGTATTTGTTGCACCGCACCTTTTTGGTTGGTCATAATCTGTCAATTGCAGATATTGCAATCTGGGCAGGTCTTGCAGGAACTGAGAAGAGATGGGAGAGTTTGAGGAAGTCGAAAAAATACCAGAACCTAGTACGGTGGTTCAACTCAATTTCTTCAGAATATGATGCTGTATTGAATGAAGTCACAGCAACATTTTTGGGTAAAAAAGGGTTGGGAAAGCCAGTCGCTTCCAAACCAAAAGAGAAGGACCAAAAAGCCCTAAACCCAAATGCCAAAAATGCTAATGATGATGTTGCTGAAAAGGGTAAAGCGGGCAGTCGACCGACTTTTGAAGTGGATCTTCCTGAAGCTGAAGTTGGAAAAGTGCGTCTACGATTTGCGCCAGAGCCAAGTGGCTATCTTCATATCGGCCATTCAAAAGCAGCACTCTTGAACCAGTATTTTGCACAACGGTACCAAGGTGAGCTGATTGTGCGTTTTGACGACACAAATCCTGCTAAAGAAAGCAATGAATTTGTGGATAATCTTCTGAAAGATATTGCAACTCTGGGTATAAAGTACGCGGATGTTACGTATACATCTGATTACTTTCCAAAGCTAATGGAATTGGCGGAGAAATTGATTTGGGAGGGTAAGGCATATGTTGATGATACACCACGTGAACAAATGCAGAAAGAAAGGATGGATGGAATTGAATCAAAGTGTAGGAATAACAGTCCGGAGGAAAACATGAAATTATGGAAGGAAATGATTTCCGGATCTGAAAGGGGTTTGATGTGCTGTGTCCGTGGGAAATTGGACATGCAGGACCCAAACAAGTCACTTAGGGATCCAGTGTATTACCGTTGCAATCCCATGCCTCACCACAGGATTGGGTCCAAGTATAAAGTATACCCGACTTATGATTTTGCTTGCCCATTTGTTGATGCAGAGGAAGGTATTACACATGCACTCCGGTCCAGCGAGTATCATGATCGCAATGCTCAGTATTACAGGATTCAAGAGGATATGGGAGTCCGAAAGGTTCATATATATGAATTCAGCCGGCTTAATATGGTATATACCCTTCTTAGCAAACGCAAGCTTCTATGGTTTGTTCAGAATGGACACGTTGAAGGGTGGGATGATGCTCGTTTCCCAACCGTCCAAGGAATTGTGCGTAGGGGTCTGCAAATTGAGGCGTTGATACAATTCATTCTTGAACAAGGGGCCTCAAAAAATCTCAATCTAATGGAGTGGGACAAGCTCTGGACCATTAACAAGAAGATAATTGATCCTGTGTGTCCCAGACACACTGCAGTAATTGAACAACGGCGGGTTTTGTTGACTCTAACTGATGGTCCCGAGGAACCTTTTGTACGCATCATACCAAGACATAAGAAATATGAAGGTGCAGGGGATAAGGCTACTACTTACACTAAGAGTATATGGATAGACCATGCTGATGCCGAAGCCATCTCTGCCAATGAGGAAATAACATTAATGGATTGGGGAAATGCCATTGTTAAAGAAATCAAGAAAGACCAGGATGGTAATGTCACACAGTTAATTGGGGTTTTGCATCTTCAAGGATCAGTCAAGACCACAAAGTTGAAACTTACCTGGCTACCCAACACAAGTGAGCTTGTGACACTCACTTTAGTGGAGTTTGATTATTTAATCACAAAAAAGAAGCTTGATGAAGATGAGAATTTTGTTGACGTGCTTAACCCGTGCACAAAAAAGGAGGTTGCTGCACTCGGGGACTCAAACATGAGGAACCTTAAACGGAATGAGATATTACAACTCGAGAGAAAAGGCTACTTCAGATGTGATGCCCCTTTTTTGAGGCCCTCAAAGCCCATAGTTCTATATGCAATTCCAGATGGGAGGCAGCAATCTTTATTGAAGTAA

Network for GWHGAAZE019078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0288

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00043.26	GST_C	69	124	0.00024
PF00749.22	tRNA-synt_1c	193	497	2.20E-101
PF03950.19	tRNA-synt_1c_C	500	677	6.10E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01885	EARS, gltX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860
		Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006424	biological_process	glutamyl-tRNA aminoacylation
GO:0043039	biological_process	tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0006412	biological_process	translation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004818	molecular_function	glutamate-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.186
	SRR3591706	second leaf	20.645
	SRR3591707	mature leaf	22.363
	SRR3591708	Shoot apex	44.527
	SRR3591709	Stem	58.760
	SRR3591710	White floral bud	39.946
	SRR3591711	White flower	56.052
	SRR3591712	Green floral bud	45.496
	SRR3591713	Yellow flower	46.059
SRP173429	SRR8316895	Juvenile bud stage	34.313
	SRR8316896	Juvenile bud stage	51.467
	SRR8316897	Juvenile bud stage	19.620
	SRR8316894	Third green stage	19.009
	SRR8316900	Third green stage	56.390
	SRR8316901	Third green stage	51.959
	SRR8316898	Complete white stage	26.700
	SRR8316899	Complete white stage	85.808
	SRR8316903	Complete white stage	38.060
	SRR8316902	Silver flowering stage	27.169
	SRR8316904	Silver flowering stage	39.032
	SRR8316905	Silver flowering stage	18.898
	SRR8316906	Gold flowering stage	64.791
	SRR8316907	Gold flowering stage	62.589
	SRR8316908	Gold flowering stage	70.892
SRP132670	SRR6706286	Control	64.102
	SRR6706287	Light intensity 50%	65.575
	SRR6706288	Light intensity 20%	70.807
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.090
	CNS0095593	Slightly white alabastrum(diploid) 2	43.888
	CNS0095594	Slightly white alabastrum(diploid) 3	40.123
	CNS0095595	Whole white alabastrum(diploid) 2	37.631
	CNS0095596	Whole white alabastrum(diploid) 3	39.072
	CNS0095597	Whole white alabastrum(diploid) 4	34.786
	CNS0095598	Silvery flower (diploied) 1	50.934
	CNS0095599	Silvery flower (diploied) 2	42.412
	CNS0095600	Silvery flower (diploied) 3	72.994
	CNS0095601	Golden flower (diploid) 1	38.474
	CNS0095602	Golden flower (diploid) 2	68.788
	CNS0095603	Golden flower (diploid) 3	67.872
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.535
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.239
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.100
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.338
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.299
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.897
	CNS0095610	Silvery flower (tetraploid) 1	56.674
	CNS0095611	Silvery flower (tetraploid) 2	56.467
	CNS0095612	Silvery flower (tetraploid) 3	43.652
	CNS0095613	Golden flower (tetraploid) 1	32.172
	CNS0095614	Golden flower (tetraploid) 2	49.642
	CNS0095615	Golden flower (tetraploid) 3	50.096
CRA001975	CRR073297	Stem 1	57.023
	CRR073298	Stem 2	57.959
	CRR073299	Stem 3	59.904
	CRR073300	Leaf 1	63.881
	CRR073301	Leaf 2	57.866
	CRR073302	Leaf 3	62.507
	CRR073303	Juvenile bud 1	67.012
	CRR073304	Juvenile bud 2	58.325
	CRR073305	Juvenile bud 3	74.405
	CRR073306	Third green 1	23.961
	CRR073307	Third green 2	24.970
	CRR073308	Third green 3	23.951
	CRR073309	Second white 1	29.285
	CRR073310	Second white 2	28.859
	CRR073311	Second white 3	28.038
	CRR073312	Silver flowering 1	28.001
	CRR073313	Silver flowering 2	27.716
	CRR073314	Silver flowering 3	25.262
	CRR073315	Gold flowering 1	24.201
	CRR073316	Gold flowering 2	34.525
	CRR073317	Gold flowering 3	26.811
	CRR073318	Tawny withering 1	62.777
	CRR073319	Tawny withering 2	56.887
	CRR073320	Tawny withering 3	63.754