Gene detail

Detail information of GWHGAAZE019085

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010240840.1	1.3342E-123	PREDICTED: uncharacterized protein DDB_G0274915-like isoform X3 [Nelumbo nucifera]
Swissprot	tr\|Q8RY25\|NU98A_ARATH	3E-103	Nuclear pore complex protein NUP98A {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|K4BNN5\|K4BNN5_SOLLC	2E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g007280.2.1}
TAIR10	AT1G10390.2	1E-90	Nucleoporin autopeptidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	31499093	31501383	-
GWHAAZE00000005	mRNA	31499093	31501383	-
GWHAAZE00000005	exon	31499093	31499634	-
GWHAAZE00000005	exon	31500219	31500281	-
GWHAAZE00000005	exon	31500497	31500659	-
GWHAAZE00000005	exon	31500808	31500924	-
GWHAAZE00000005	exon	31501222	31501383	-
GWHAAZE00000005	CDS	31501222	31501383	-
GWHAAZE00000005	CDS	31500808	31500924	-
GWHAAZE00000005	CDS	31500497	31500659	-
GWHAAZE00000005	CDS	31500219	31500281	-
GWHAAZE00000005	CDS	31499093	31499634	-

Transcript Sequence
>GWHTAAZE019107 ATGCATGATTACAAGTTTTTCAGGTTTGCCTCTCTGAGCACTGCGGAAGTGCAACCTCCATCTGTCGTGGATCCTTTTGGAACATTACCTGCAATGCCTCATCCATCAATTGCCCTCGTGGGACCCACATCATCACTTCAATTTGGAATTTCTAGTATATCGGTTTCAAAAAAGCAGGTTCCTGATAGAGTTTCATCGTTGCTGACCATTCGACAGTCGTCTCAAAGATGGAATAGGTTGCCAGTTCAGATATGCGATCCTAGAAGTGAAGGTCGAAAGGTTCCATTTTTCGGTGATGATTGTGAAATACCTACACCTGCCATTATTCCAAGGAAGAATCCTAGAGCTATGGTTATTGGCCCTGCTGAACATTGGCCCATGAGGGTTAAATCAGAGAAATTTACTGTACCAAAGCATATGCCTATTCGTGGATATGAAAGCGGTCAAGATGATGCGGAGGCTTATGCTTCTGTTTTAGATGGTGCCATAAATCAGGATGAAAATGGAAATTCAGGTGAAAATAACACGGGTAAAGAGCATGCTAACGAGGACACTGCACCTGTTTATGAACAAAGTGCTGATCTTACAGCACTGTTGCCTAAGCTCCACAAATGCTCTGACTATTATACAGAGCCTCAAATCCAAGATTTGGCATCAAAGGAGAGGGTTGAGCCCGGGTTCATTTCCCGAGTAAAGGACTTCGTTATTGGCCGACATGGCTACGGGAGCATTAAGTTTCTGGGTTTGACAGACGTGCAGGAACTCAACCTTGAATCATTAATCCAATTTAATAACCGAGAGGTGATTGTGTACCCGGACAATACCAAGAAACACCCGGTCGGTCAAGGTCTCAACAAGCCCTCTGAGGTAACTCTTCTTAACTTCAAATGTATCGATAAAAGAACTGGGAAACACTACGTAGATGGACCGAAGACTGACAAGTACAGAGAGATGCTGATGAAGGCAGCGATAGATCAAGGGGTTGAGTTTGTGTCTTATGATCCAGTTGAAGGGGAGTGGAAATTCAGGGTCCAGCACTTCAATTGA

Network for GWHGAAZE019085

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04096.15	Nucleoporin2	206	347	6.60E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14297	NUP98, ADAR2, NUP116	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006913	biological_process	nucleocytoplasmic transport
GO:0005643	cellular_component	nuclear pore
GO:0017056	molecular_function	structural constituent of nuclear pore

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.854
	SRR3591706	second leaf	1.504
	SRR3591707	mature leaf	6.780
	SRR3591708	Shoot apex	5.323
	SRR3591709	Stem	24.202
	SRR3591710	White floral bud	15.390
	SRR3591711	White flower	25.866
	SRR3591712	Green floral bud	19.557
	SRR3591713	Yellow flower	9.478
SRP173429	SRR8316895	Juvenile bud stage	23.135
	SRR8316896	Juvenile bud stage	25.770
	SRR8316897	Juvenile bud stage	11.161
	SRR8316894	Third green stage	7.587
	SRR8316900	Third green stage	11.143
	SRR8316901	Third green stage	12.956
	SRR8316898	Complete white stage	2.647
	SRR8316899	Complete white stage	12.782
	SRR8316903	Complete white stage	8.152
	SRR8316902	Silver flowering stage	13.988
	SRR8316904	Silver flowering stage	18.112
	SRR8316905	Silver flowering stage	5.637
	SRR8316906	Gold flowering stage	12.247
	SRR8316907	Gold flowering stage	16.488
	SRR8316908	Gold flowering stage	16.620
SRP132670	SRR6706286	Control	6.156
	SRR6706287	Light intensity 50%	7.165
	SRR6706288	Light intensity 20%	8.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.357
	CNS0095593	Slightly white alabastrum(diploid) 2	14.043
	CNS0095594	Slightly white alabastrum(diploid) 3	22.442
	CNS0095595	Whole white alabastrum(diploid) 2	15.491
	CNS0095596	Whole white alabastrum(diploid) 3	10.515
	CNS0095597	Whole white alabastrum(diploid) 4	14.627
	CNS0095598	Silvery flower (diploied) 1	34.077
	CNS0095599	Silvery flower (diploied) 2	23.620
	CNS0095600	Silvery flower (diploied) 3	18.075
	CNS0095601	Golden flower (diploid) 1	24.290
	CNS0095602	Golden flower (diploid) 2	19.595
	CNS0095603	Golden flower (diploid) 3	21.268
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.993
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.220
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.492
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.336
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.265
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.296
	CNS0095610	Silvery flower (tetraploid) 1	25.445
	CNS0095611	Silvery flower (tetraploid) 2	20.606
	CNS0095612	Silvery flower (tetraploid) 3	19.956
	CNS0095613	Golden flower (tetraploid) 1	12.029
	CNS0095614	Golden flower (tetraploid) 2	12.662
	CNS0095615	Golden flower (tetraploid) 3	4.703
CRA001975	CRR073297	Stem 1	38.623
	CRR073298	Stem 2	25.554
	CRR073299	Stem 3	13.323
	CRR073300	Leaf 1	8.073
	CRR073301	Leaf 2	5.236
	CRR073302	Leaf 3	1.784
	CRR073303	Juvenile bud 1	2.687
	CRR073304	Juvenile bud 2	1.032
	CRR073305	Juvenile bud 3	5.043
	CRR073306	Third green 1	0.844
	CRR073307	Third green 2	1.322
	CRR073308	Third green 3	0.780
	CRR073309	Second white 1	2.579
	CRR073310	Second white 2	3.393
	CRR073311	Second white 3	3.722
	CRR073312	Silver flowering 1	2.677
	CRR073313	Silver flowering 2	2.610
	CRR073314	Silver flowering 3	2.595
	CRR073315	Gold flowering 1	5.846
	CRR073316	Gold flowering 2	7.580
	CRR073317	Gold flowering 3	4.126
	CRR073318	Tawny withering 1	7.555
	CRR073319	Tawny withering 2	11.340
	CRR073320	Tawny withering 3	12.181