Detail information of GWHGAAZE019087


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010240840.15.20319E-87PREDICTED: uncharacterized protein DDB_G0274915-like isoform X3 [Nelumbo nucifera]
Swissprottr|F4ID16|NU98B_ARATH2E-68Nuclear pore complex protein NUP98B {ECO:0000303|PubMed:21189294}
trEMBLtr|B9I0P2|B9I0P2_POPTR2E-82Nucleoporin family protein {ECO:0000313|EMBL:EEE98266.1}
TAIR10AT1G59660.11E-63Nucleoporin autopeptidase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3150308831514459-
GWHAAZE00000005mRNA3150308831514459-
GWHAAZE00000005exon3151430131514459-
GWHAAZE00000005exon3151406231514178-
GWHAAZE00000005exon3151374231513901-
GWHAAZE00000005exon3151354731513609-
GWHAAZE00000005exon3151315331513324-
GWHAAZE00000005exon3151283531513045-
GWHAAZE00000005exon3150844831508682-
GWHAAZE00000005exon3150705631507217-
GWHAAZE00000005exon3150674031506940-
GWHAAZE00000005exon3150607831506239-
GWHAAZE00000005exon3150574131505941-
GWHAAZE00000005exon3150506231505223-
GWHAAZE00000005exon3150472631504925-
GWHAAZE00000005exon3150404831504189-
GWHAAZE00000005exon3150356631503932-
GWHAAZE00000005exon3150308831503103-
GWHAAZE00000005CDS3151430131514459-
GWHAAZE00000005CDS3151406231514178-
GWHAAZE00000005CDS3151374231513901-
GWHAAZE00000005CDS3151354731513609-
GWHAAZE00000005CDS3151315331513324-
GWHAAZE00000005CDS3151283531513045-
GWHAAZE00000005CDS3150844831508682-
GWHAAZE00000005CDS3150705631507217-
GWHAAZE00000005CDS3150674031506940-
GWHAAZE00000005CDS3150607831506239-
GWHAAZE00000005CDS3150574131505941-
GWHAAZE00000005CDS3150506231505223-
GWHAAZE00000005CDS3150472631504925-
GWHAAZE00000005CDS3150404831504189-
GWHAAZE00000005CDS3150356631503932-
GWHAAZE00000005CDS3150308831503103-
Transcript Sequence

Network for GWHGAAZE019087

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04096.15Nucleoporin22242965.30E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14297NUP98, ADAR2, NUP116 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0006913biological_processnucleocytoplasmic transport
GO:0005643cellular_componentnuclear pore
GO:0017056molecular_functionstructural constituent of nuclear pore

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.353
SRR3591706second leaf3.025
SRR3591707mature leaf7.007
SRR3591708Shoot apex4.380
SRR3591709Stem15.053
SRR3591710White floral bud12.961
SRR3591711White flower27.095
SRR3591712Green floral bud12.559
SRR3591713Yellow flower9.895
SRP173429 SRR8316895Juvenile bud stage 21.589
SRR8316896Juvenile bud stage 23.686
SRR8316897Juvenile bud stage 12.060
SRR8316894Third green stage 5.099
SRR8316900Third green stage 9.168
SRR8316901Third green stage 13.126
SRR8316898Complete white stage 1.977
SRR8316899Complete white stage 16.960
SRR8316903Complete white stage 4.585
SRR8316902Silver flowering stage13.286
SRR8316904Silver flowering stage14.415
SRR8316905Silver flowering stage2.993
SRR8316906Gold flowering stage 7.048
SRR8316907Gold flowering stage 8.279
SRR8316908Gold flowering stage 8.262
SRP132670SRR6706286Control5.307
SRR6706287Light intensity 50%5.517
SRR6706288Light intensity 20%5.783
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.792
CNS0095593Slightly white alabastrum(diploid) 214.483
CNS0095594Slightly white alabastrum(diploid) 313.803
CNS0095595Whole white alabastrum(diploid) 27.890
CNS0095596Whole white alabastrum(diploid) 32.925
CNS0095597Whole white alabastrum(diploid) 47.543
CNS0095598Silvery flower (diploied) 117.376
CNS0095599Silvery flower (diploied) 213.178
CNS0095600Silvery flower (diploied) 315.718
CNS0095601Golden flower (diploid) 112.594
CNS0095602Golden flower (diploid) 215.325
CNS0095603Golden flower (diploid) 314.543
CNS0095604Slightly white alabastrum(tetraploid) 13.629
CNS0095605Slightly white alabastrum(tetraploid) 23.619
CNS0095606Slightly white alabastrum(tetraploid) 37.131
CNS0095607Whole white alabastrum(tetraploid) 13.306
CNS0095608Whole white alabastrum(tetraploid) 21.852
CNS0095609Whole white alabastrum(tetraploid) 34.581
CNS0095610Silvery flower (tetraploid) 19.022
CNS0095611Silvery flower (tetraploid) 28.271
CNS0095612Silvery flower (tetraploid) 37.975
CNS0095613Golden flower (tetraploid) 13.062
CNS0095614Golden flower (tetraploid) 24.883
CNS0095615Golden flower (tetraploid) 33.651
CRA001975CRR073297Stem 116.047
CRR073298Stem 210.162
CRR073299Stem 35.196
CRR073300Leaf 16.014
CRR073301Leaf 28.656
CRR073302Leaf 32.564
CRR073303Juvenile bud 13.136
CRR073304Juvenile bud 20.865
CRR073305Juvenile bud 34.441
CRR073306Third green 10.946
CRR073307Third green 21.320
CRR073308Third green 31.549
CRR073309Second white 10.689
CRR073310Second white 22.668
CRR073311Second white 32.703
CRR073312Silver flowering 13.158
CRR073313Silver flowering 22.594
CRR073314Silver flowering 31.800
CRR073315Gold flowering 14.451
CRR073316Gold flowering 27.682
CRR073317Gold flowering 31.393
CRR073318Tawny withering 15.154
CRR073319Tawny withering 26.627
CRR073320Tawny withering 37.289