Gene detail

Detail information of GWHGAAZE019093

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276091.1	5.024E-134	PREDICTED: transcription factor MYB86 [Vitis vinifera]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	6E-78	Transcription factor MYB86
trEMBL	tr\|F6I4I7\|F6I4I7_VITVI	2E-134	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61971.1}
TAIR10	AT1G09540.1	3E-76	myb domain protein 61

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	31610271	31611646	-
GWHAAZE00000005	mRNA	31610271	31611646	-
GWHAAZE00000005	exon	31610271	31611183	-
GWHAAZE00000005	exon	31611296	31611425	-
GWHAAZE00000005	exon	31611514	31611646	-
GWHAAZE00000005	CDS	31611514	31611646	-
GWHAAZE00000005	CDS	31611296	31611425	-
GWHAAZE00000005	CDS	31610271	31611183	-

Transcript Sequence
>GWHTAAZE019115 ATGGGGAGGCATTCTTGTTGTTATAAGCAGAAGCTAAGGAAAGGCCTTTGGTCACCTGAGGAAGATGAGAAACTCATTAAACACATTAACAAATTCGGCCATGGTTGTTGGAGCTCTGTTCCTAAACTCGCAGGTCTTCAAAGATGCGGAAAGAGTTGTAGATTAAGGTGGATTAACTACTTGAGGCCTGATCTCAAAAGAGGCACATTCTCGCAACAAGAAGAGGATTCAATAATCGAATTACACGCGGTTCTTGGAAACAAATGGTCACAAATTGCAGCTCAGTTGCCAGGCAGGACAGATAACGAGATAAAGAATTTATGGAACTCGTCGATTAAAAAGAAACTAAGGCAAAGAGGGATCGACCCCAACACACACAAGCCAATATCCGAGTCCGAGAATGAAGAAAACTCCAACACACAAAATGAAAACAACAAGAATGTATTTGAAGTATCGAACAAGCCCCTAGAGAAGTTGGTGGACCACTACCCAGCACCACAGCCGCCGCCACCACCACAACCGCCAACTCAAGAATTCTTTCTAAACAGGTTTGTTACCACCCAAGAAAGCGCTACCACCAATAATCCCAACAGTACTTTCTTTTTAAACTACGATCAATCCGATATTGCAGCTTCAGTCAATAATCCCACCAGTACCTTTTTCTTGAACCCCAACGCGATTCTTTCAACTCCACCGCGTATAAATTCCTCCGAATTCAATCCCAACATTCTACCCTCTATGTCAAGCTCCATTCTTTCAACTCCACAGCGCATCAAGCCCTCCATTAGCCTCCCCTCCTCTAGAAACGCACCAATGGGCTCTTTTATCAATAACTGGGACGCGAGTAACACGCTTACCCCAAGCTCTAACAGCAACAATGGGAGTAATAGTAATAATTGTGCATTCTTCGAGAACAATTCTTTTTCTTGGGGACAGAAAGACAGTCAAAAGTCTCGGAGTATAGATACCCCGATTCATTCTTTGGGTGGCGATCAAGAAGAAATCAAATGGGCAGATTATTATCCAGCTCCATTTTTAAGCACAATTCAGAACCAGAATACCGAAGAAATTTACAGTGATGATAAAAGCGAAGTTCAGTTCAATAATAATATGACTTGGGATGTAAGCGAACAACATTTCCAGAGACTCTCTGCTGCATTTGGCCAGTATTCGTAG

Network for GWHGAAZE019093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	8.50E-15
PF00249.32	Myb_DNA-binding	67	109	7.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.237
	SRR3591706	second leaf	4.034
	SRR3591707	mature leaf	2.105
	SRR3591708	Shoot apex	21.507
	SRR3591709	Stem	25.872
	SRR3591710	White floral bud	7.682
	SRR3591711	White flower	3.799
	SRR3591712	Green floral bud	2.848
	SRR3591713	Yellow flower	4.628
SRP173429	SRR8316895	Juvenile bud stage	1.603
	SRR8316896	Juvenile bud stage	1.191
	SRR8316897	Juvenile bud stage	0.855
	SRR8316894	Third green stage	0.842
	SRR8316900	Third green stage	1.046
	SRR8316901	Third green stage	1.405
	SRR8316898	Complete white stage	7.558
	SRR8316899	Complete white stage	5.960
	SRR8316903	Complete white stage	16.862
	SRR8316902	Silver flowering stage	12.783
	SRR8316904	Silver flowering stage	22.041
	SRR8316905	Silver flowering stage	10.250
	SRR8316906	Gold flowering stage	16.595
	SRR8316907	Gold flowering stage	17.692
	SRR8316908	Gold flowering stage	18.797
SRP132670	SRR6706286	Control	3.454
	SRR6706287	Light intensity 50%	3.341
	SRR6706288	Light intensity 20%	2.533
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.860
	CNS0095593	Slightly white alabastrum(diploid) 2	2.958
	CNS0095594	Slightly white alabastrum(diploid) 3	1.016
	CNS0095595	Whole white alabastrum(diploid) 2	1.653
	CNS0095596	Whole white alabastrum(diploid) 3	1.383
	CNS0095597	Whole white alabastrum(diploid) 4	1.295
	CNS0095598	Silvery flower (diploied) 1	9.435
	CNS0095599	Silvery flower (diploied) 2	2.748
	CNS0095600	Silvery flower (diploied) 3	12.667
	CNS0095601	Golden flower (diploid) 1	1.996
	CNS0095602	Golden flower (diploid) 2	8.250
	CNS0095603	Golden flower (diploid) 3	8.427
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.852
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.751
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.575
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.854
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.454
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.161
	CNS0095610	Silvery flower (tetraploid) 1	9.937
	CNS0095611	Silvery flower (tetraploid) 2	10.831
	CNS0095612	Silvery flower (tetraploid) 3	18.672
	CNS0095613	Golden flower (tetraploid) 1	7.914
	CNS0095614	Golden flower (tetraploid) 2	7.257
	CNS0095615	Golden flower (tetraploid) 3	5.608
CRA001975	CRR073297	Stem 1	13.685
	CRR073298	Stem 2	11.014
	CRR073299	Stem 3	9.693
	CRR073300	Leaf 1	8.006
	CRR073301	Leaf 2	10.373
	CRR073302	Leaf 3	8.468
	CRR073303	Juvenile bud 1	7.073
	CRR073304	Juvenile bud 2	4.199
	CRR073305	Juvenile bud 3	13.724
	CRR073306	Third green 1	15.515
	CRR073307	Third green 2	40.437
	CRR073308	Third green 3	33.858
	CRR073309	Second white 1	24.390
	CRR073310	Second white 2	9.013
	CRR073311	Second white 3	11.222
	CRR073312	Silver flowering 1	5.544
	CRR073313	Silver flowering 2	8.480
	CRR073314	Silver flowering 3	8.340
	CRR073315	Gold flowering 1	3.429
	CRR073316	Gold flowering 2	3.772
	CRR073317	Gold flowering 3	3.089
	CRR073318	Tawny withering 1	26.225
	CRR073319	Tawny withering 2	16.634
	CRR073320	Tawny withering 3	18.352