Gene detail

Detail information of GWHGAAZE019102

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080665.1	0	PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9CA86\|PEX2_ARATH	4E-163	Peroxisome biogenesis protein 2
trEMBL	tr\|D7U0G2\|D7U0G2_VITVI	2E-180	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36108.3}
TAIR10	AT1G79810.1	6E-132	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	31866329	31883568	+
GWHAAZE00000005	mRNA	31866329	31883568	+
GWHAAZE00000005	exon	31866329	31866466	+
GWHAAZE00000005	exon	31867386	31867499	+
GWHAAZE00000005	exon	31867624	31867777	+
GWHAAZE00000005	exon	31867915	31868051	+
GWHAAZE00000005	exon	31868187	31868287	+
GWHAAZE00000005	exon	31869467	31869584	+
GWHAAZE00000005	exon	31869923	31870089	+
GWHAAZE00000005	exon	31875042	31875123	+
GWHAAZE00000005	exon	31875684	31875879	+
GWHAAZE00000005	exon	31880351	31880505	+
GWHAAZE00000005	exon	31880766	31880909	+
GWHAAZE00000005	exon	31881617	31881708	+
GWHAAZE00000005	exon	31881847	31881991	+
GWHAAZE00000005	exon	31883161	31883568	+
GWHAAZE00000005	CDS	31866329	31866466	+
GWHAAZE00000005	CDS	31867386	31867499	+
GWHAAZE00000005	CDS	31867624	31867777	+
GWHAAZE00000005	CDS	31867915	31868051	+
GWHAAZE00000005	CDS	31868187	31868287	+
GWHAAZE00000005	CDS	31869467	31869584	+
GWHAAZE00000005	CDS	31869923	31870089	+
GWHAAZE00000005	CDS	31875042	31875123	+
GWHAAZE00000005	CDS	31875684	31875879	+
GWHAAZE00000005	CDS	31880351	31880505	+
GWHAAZE00000005	CDS	31880766	31880909	+
GWHAAZE00000005	CDS	31881617	31881708	+
GWHAAZE00000005	CDS	31881847	31881991	+
GWHAAZE00000005	CDS	31883161	31883241	+
GWHAAZE00000005	three_prime_UTR	31883242	31883568	+

Transcript Sequence
>GWHTAAZE019124 ATGATGACAGAAACCCTAGCTTTACAATCATCGTCTTCATCATCGATCAGTACCAATTCCCCACCCCCTGAAGATGCTTGGGTTACTGCATACCAAAGATTACTCCCTCAATGGCACTCCCTCACTCCCTCCACTCAGTCAGCCATTCCAATTGCCATATCGAGAGTTAATCAGATTGATGCAGCCAGACTGGACGTTGAAATGTCCGCCATGTTGAAAGAACAGTTGGTTAAGGTTTTTTCTTTAATGAAGCCAGGGTTGTTATTCCAATATGAACCAGAACTCGATGCTTTCCTCGAGTTTCTTATATGGAGGTTCTCTATTTGGGTTGATAAGCCTACACCAGGAAATGGTCTCATGAATTTGAGATATAGAGATGAACGTGCCATTGAAACGAGAGGAAAAGTGAGAACTGGTTTGGAGGGACCTGGACTCTCTGTGGCTCAGAAGATATGGTATTGTGTTGCCACTGTTGGTGGCCAATATATCTGGGCCCGTCTACAATCTTTTTCTGCTTTTCGCCGATGGGGTGATTCTGAGCAGAGGTCTGTGGCACGTCGATCATGGTATTTACTACAGCGTATAGAAGGATTTTATAAAGCTGCATCGTTTAGCAACCTGCTCATATTTCTTTGCACAGGAAGGTTTAGAAATCTTATTGAGAGAGCTCTAAAAGCAAGACTTGTCTACGGTAGCCCTCACATGAACCGAGCTGTTAGTTTTGAGTACATGAATCGCCAGTTGGTCTGGAATGAATTCTCGGAAATGTTGTTGCTTCTTCTTCCTCTTCTCAATTCATCATCAATAAAAAGTTTCCTTCGTCCATTCTCGAAGGATAAATCATTGAATTCTGCAGAGGATGAAACGTTATGCCCCATTTGCCAGGCAAATCCGACCATTCCATTTTTAGCTCTCCCTTGTCAGCACAGGATACATAAGATGGACAATAGATGGTACAATGGCAAACAGGAATCACGCTTTAGAGATAAACAGCAGCAGATACTAGAGGAGACAAATAAGGAATCTGTTCTAGAGGATCTTGCGGAAGACTTCCGCCTACCAATTAATCAAAGGCTAACAGAGAATGTAGACCTTGATAATGTGGAGCAAGCATCATTAGACACTCAGTTGCCATCCTCGAACATTGGGTTTAAGCTTCTCCAGAAGATGGGGTGGAAAGGGAAAGGTCTAGGGAAGGATGAGCAAGGCATAACCGAGCCAATAAAATCTGGGATGAGAGACCCAAGATTAGGAGTAGGGAAACAAGAGGAAGACGATTTTTTTACTGCAGAAGAAAATATCCAGCGGAAGAAACTTGATGTGGAGTTAGAGGAGACTGAGGATAGTTTAAAGAAGCGGGAGGTTATGGCAGAACGTGAGCAGAGAATTCAAACTGACGTGAAAGAAATTCGGAAGGTTTTCTATTGCGAGCTTTGCAACAAGCAATATAAGTTGGCCGTGGAGTTTGAAGGTCACCTAAGCTCATATGATCACAACCATAGAAAGCGTTTCAAGGAAATGAAAGAATTGCATGGAAGTAGCAGTCGCGATGACAGGCAAAAACGAGAACAACAACGCCAGGAGCGGGAGTTGGCCAAGGCCGATGCCCATAAGCAGCAGCAGCAACAGCAACAAGAGGAGTCGGGGGCCTCGGCTGCAGTTAGAAGTGCTACTGCTCTTGCCGATCAGGAGCAGAGGAAGGTGCTAAAGTTTGGTTTTTCCTCAAAAGTTGGCACTTCCAAGAGTTCGGTCTCTAATGCTGCAAAGAAGAAGCCAAAAGTAGTCGTTGCCTCGGTTTTCAACAATGATAGTGACGAGGAATAGTAGAAGTTCAGCCGCCCAAACCAAATGCGTATATTGATTTGCGGATGAGAATGGTCTCCTTTGGTTCAATCTTGTAATGTTTGTATTTCATACATGTTAGTTAAAGAAGGAAAGTAGTGTGACTTCTCATGCCCCCTCTTGTTTTTATATATCTCCCATGTTTGGGGCCTTGGGATATTAAATTAGTAACAGTTGCTGATGGTAACGTTAAATATCCAAATGATAGGTAGGAATGAACTTCAAACTGCAAAATATGTGCGATTGGTCATTGGCTTTGTATTGGGTTTAAGGAAGTCTTATCGAGTTAAAATCAACTATAATTGACTA

Network for GWHGAAZE019102

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04757.15	Pex2_Pex12	65	275	7.40E-37
PF01585.24	G-patch	380	420	4.40E-15

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K06664	PEX2, PXMP3	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.173
	SRR3591706	second leaf	17.223
	SRR3591707	mature leaf	21.164
	SRR3591708	Shoot apex	28.738
	SRR3591709	Stem	27.399
	SRR3591710	White floral bud	36.444
	SRR3591711	White flower	34.431
	SRR3591712	Green floral bud	27.634
	SRR3591713	Yellow flower	29.016
SRP173429	SRR8316895	Juvenile bud stage	18.013
	SRR8316896	Juvenile bud stage	22.647
	SRR8316897	Juvenile bud stage	9.547
	SRR8316894	Third green stage	10.295
	SRR8316900	Third green stage	21.851
	SRR8316901	Third green stage	23.976
	SRR8316898	Complete white stage	14.175
	SRR8316899	Complete white stage	36.703
	SRR8316903	Complete white stage	23.984
	SRR8316902	Silver flowering stage	14.116
	SRR8316904	Silver flowering stage	20.105
	SRR8316905	Silver flowering stage	8.647
	SRR8316906	Gold flowering stage	26.652
	SRR8316907	Gold flowering stage	24.258
	SRR8316908	Gold flowering stage	26.590
SRP132670	SRR6706286	Control	14.864
	SRR6706287	Light intensity 50%	15.363
	SRR6706288	Light intensity 20%	16.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.921
	CNS0095593	Slightly white alabastrum(diploid) 2	17.603
	CNS0095594	Slightly white alabastrum(diploid) 3	17.914
	CNS0095595	Whole white alabastrum(diploid) 2	17.936
	CNS0095596	Whole white alabastrum(diploid) 3	16.906
	CNS0095597	Whole white alabastrum(diploid) 4	17.624
	CNS0095598	Silvery flower (diploied) 1	31.543
	CNS0095599	Silvery flower (diploied) 2	16.181
	CNS0095600	Silvery flower (diploied) 3	23.467
	CNS0095601	Golden flower (diploid) 1	19.539
	CNS0095602	Golden flower (diploid) 2	20.755
	CNS0095603	Golden flower (diploid) 3	21.434
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.570
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.090
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.708
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.985
	CNS0095610	Silvery flower (tetraploid) 1	31.206
	CNS0095611	Silvery flower (tetraploid) 2	26.949
	CNS0095612	Silvery flower (tetraploid) 3	31.886
	CNS0095613	Golden flower (tetraploid) 1	24.162
	CNS0095614	Golden flower (tetraploid) 2	27.203
	CNS0095615	Golden flower (tetraploid) 3	25.431
CRA001975	CRR073297	Stem 1	24.016
	CRR073298	Stem 2	20.709
	CRR073299	Stem 3	13.482
	CRR073300	Leaf 1	20.481
	CRR073301	Leaf 2	20.437
	CRR073302	Leaf 3	13.867
	CRR073303	Juvenile bud 1	12.121
	CRR073304	Juvenile bud 2	10.944
	CRR073305	Juvenile bud 3	10.883
	CRR073306	Third green 1	4.753
	CRR073307	Third green 2	5.556
	CRR073308	Third green 3	5.629
	CRR073309	Second white 1	5.797
	CRR073310	Second white 2	9.141
	CRR073311	Second white 3	6.451
	CRR073312	Silver flowering 1	6.157
	CRR073313	Silver flowering 2	5.489
	CRR073314	Silver flowering 3	5.878
	CRR073315	Gold flowering 1	9.349
	CRR073316	Gold flowering 2	11.721
	CRR073317	Gold flowering 3	5.225
	CRR073318	Tawny withering 1	14.215
	CRR073319	Tawny withering 2	18.540
	CRR073320	Tawny withering 3	13.490