Gene detail

Detail information of GWHGAAZE019112

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009797340.1	5.96891E-68	PREDICTED: F-box protein At3g07870-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	2E-12	F-box protein At3g07870
trEMBL	tr\|A0A059B7J8\|A0A059B7J8_EUCGR	8E-50	Uncharacterized protein {ECO:0000313\|EMBL:KCW62103.1}
TAIR10	AT3G06240.1	1E-11	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	32036131	32037312	+
GWHAAZE00000005	mRNA	32036131	32037312	+
GWHAAZE00000005	exon	32036131	32037312	+
GWHAAZE00000005	CDS	32036131	32037312	+

Transcript Sequence
>GWHTAAZE019134 ATGTCCCTCCAATGCTTGACGACGTGGATTCCGCATATTTTTCATCAACTATGTAGTCCATTTAAGTGTCACGAAGAAGTTTTTCGACTGCTTTCCGATGATACAATCACTGACATTCTTACTAGACTCCCAACCGATTGCCTTGTACAATGCCAAAGTGTGTGTAAGCACTGGCGTGTTTTAAGCTCGGCCCCATATTTTGCTTCACTGCATCTTGAAAGATCCACCTCATCACTCTTTGTGCAGTGCCACGACAGGAGAAGTCTGTTTATTTTCGACGAAAATGCTAAAAAGAATAAGAGGATCATGAAAATCCGTACAAGCCCGGCCCACATAATGAACTGCCATTGGCCTGTGCTTTCTGGTTCTTGCAATGGATTGCTCCTATTTCGATCAGCTTCTTGCATGTCGAAGATTTTTATTTTCAACCCCATTAAGCAAGAGGAAATAACTCTAACTGGTCCAGTTCAGGCGGGCTATTTATGCGGGATCTACTTTCGTGCGTTAACAAGCGAATACAAGTTGCTGTATGCTTATACAAATGGCAATTGCTTTCATTATTTGGCGTGCACCGTTGGGGAAAATATTTGGAGAGAACTTGATTCGTTTTCTTATCTGCCTCAGCTGAAAGCGTCCGCCCCTGCAACTGTGAACGGATCTATACATTGGATGATCCGACATGAATATAGAAATGTAAACAATATTAACCATTGTATAAACGCAATCATGGTCTTTAGCACAGGTAATGAAACTTTTCGAGTAATGCCTCATCCAGGTAATGAGTGTGGCTCTAGTAAACACCACAGAAAGAATATTCTACTTTTGGTGATGAAAGAGAGTTTGTGTTTGTGTCATTTGTACGGTAAATTAGTTGATATATGGGTACTTGAGGAATATGATAACTGGGTCTGGGTTAGTAGATACAGAGTCGATCTCGATTGTGATGTGAGATGTTACCCTCACACCGGACCAGACCATTTTGGCAATATGAAGATGAAAATATTGGGTATCCAAAATAGCGAAATGCTAGTGGTGTGGGACTCAAGTGGGTTGTTTTGGTACAATCTGGAGATGAAAAGGGTTAGGAAAGTCGTGACGAAGAAGGGGAAATTTACGAATTATTTGTGCTACTCGACTGTTTACACAAAATCCCTTGTTAGTTTGAGTGGTGGTTATGCTTAA

Network for GWHGAAZE019112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	31	62	5.80E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.122
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.220
	SRR3591711	White flower	0.340
	SRR3591712	Green floral bud	0.595
	SRR3591713	Yellow flower	0.160
SRP173429	SRR8316895	Juvenile bud stage	1.022
	SRR8316896	Juvenile bud stage	1.408
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.491
	SRR8316900	Third green stage	2.620
	SRR8316901	Third green stage	1.115
	SRR8316898	Complete white stage	0.146
	SRR8316899	Complete white stage	1.729
	SRR8316903	Complete white stage	0.810
	SRR8316902	Silver flowering stage	0.342
	SRR8316904	Silver flowering stage	0.368
	SRR8316905	Silver flowering stage	0.208
	SRR8316906	Gold flowering stage	0.926
	SRR8316907	Gold flowering stage	0.497
	SRR8316908	Gold flowering stage	0.210
SRP132670	SRR6706286	Control	1.548
	SRR6706287	Light intensity 50%	1.335
	SRR6706288	Light intensity 20%	1.537
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.327
	CNS0095593	Slightly white alabastrum(diploid) 2	1.487
	CNS0095594	Slightly white alabastrum(diploid) 3	1.543
	CNS0095595	Whole white alabastrum(diploid) 2	0.929
	CNS0095596	Whole white alabastrum(diploid) 3	1.141
	CNS0095597	Whole white alabastrum(diploid) 4	1.017
	CNS0095598	Silvery flower (diploied) 1	2.116
	CNS0095599	Silvery flower (diploied) 2	1.747
	CNS0095600	Silvery flower (diploied) 3	1.146
	CNS0095601	Golden flower (diploid) 1	0.938
	CNS0095602	Golden flower (diploid) 2	1.517
	CNS0095603	Golden flower (diploid) 3	1.356
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.641
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.189
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.626
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.248
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.325
	CNS0095610	Silvery flower (tetraploid) 1	0.162
	CNS0095611	Silvery flower (tetraploid) 2	0.098
	CNS0095612	Silvery flower (tetraploid) 3	0.253
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.095
	CNS0095615	Golden flower (tetraploid) 3	0.083
CRA001975	CRR073297	Stem 1	1.472
	CRR073298	Stem 2	0.902
	CRR073299	Stem 3	0.752
	CRR073300	Leaf 1	1.529
	CRR073301	Leaf 2	0.568
	CRR073302	Leaf 3	1.556
	CRR073303	Juvenile bud 1	1.036
	CRR073304	Juvenile bud 2	0.071
	CRR073305	Juvenile bud 3	0.963
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.201
	CRR073309	Second white 1	0.484
	CRR073310	Second white 2	0.714
	CRR073311	Second white 3	0.254
	CRR073312	Silver flowering 1	0.388
	CRR073313	Silver flowering 2	0.182
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.076
	CRR073316	Gold flowering 2	0.134
	CRR073317	Gold flowering 3	0.072
	CRR073318	Tawny withering 1	3.545
	CRR073319	Tawny withering 2	1.806
	CRR073320	Tawny withering 3	0.775