Detail information of GWHGAAZE019170


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO57416.18.03407E-32hypothetical protein CISIN_1g015535mg [Citrus sinensis]
Swissprottr|Q9SFC7|FB135_ARATH1E-10F-box protein At3g07870
trEMBLtr|A0A067F2H6|A0A067F2H6_CITSI3E-32Uncharacterized protein {ECO:0000313|EMBL:KDO57416.1}
TAIR10AT3G07870.15E-10F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3311177233112961-
GWHAAZE00000005mRNA3311177233112961-
GWHAAZE00000005exon3311177233112224-
GWHAAZE00000005exon3311234733112961-
GWHAAZE00000005CDS3311234733112961-
GWHAAZE00000005CDS3311177233112224-
Transcript Sequence

Network for GWHGAAZE019170

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box18589.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.169
SRR3591706second leaf8.111
SRR3591707mature leaf9.138
SRR3591708Shoot apex16.290
SRR3591709Stem10.718
SRR3591710White floral bud15.465
SRR3591711White flower13.546
SRR3591712Green floral bud14.647
SRR3591713Yellow flower7.509
SRP173429 SRR8316895Juvenile bud stage 6.562
SRR8316896Juvenile bud stage 9.017
SRR8316897Juvenile bud stage 3.739
SRR8316894Third green stage 5.082
SRR8316900Third green stage 13.784
SRR8316901Third green stage 10.634
SRR8316898Complete white stage 3.087
SRR8316899Complete white stage 13.615
SRR8316903Complete white stage 6.480
SRR8316902Silver flowering stage4.301
SRR8316904Silver flowering stage3.713
SRR8316905Silver flowering stage2.768
SRR8316906Gold flowering stage 7.417
SRR8316907Gold flowering stage 4.974
SRR8316908Gold flowering stage 7.876
SRP132670SRR6706286Control6.314
SRR6706287Light intensity 50%7.348
SRR6706288Light intensity 20%7.581
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.699
CNS0095593Slightly white alabastrum(diploid) 28.677
CNS0095594Slightly white alabastrum(diploid) 39.878
CNS0095595Whole white alabastrum(diploid) 27.798
CNS0095596Whole white alabastrum(diploid) 36.375
CNS0095597Whole white alabastrum(diploid) 46.788
CNS0095598Silvery flower (diploied) 111.979
CNS0095599Silvery flower (diploied) 210.208
CNS0095600Silvery flower (diploied) 38.605
CNS0095601Golden flower (diploid) 18.637
CNS0095602Golden flower (diploid) 26.055
CNS0095603Golden flower (diploid) 37.639
CNS0095604Slightly white alabastrum(tetraploid) 111.567
CNS0095605Slightly white alabastrum(tetraploid) 28.483
CNS0095606Slightly white alabastrum(tetraploid) 320.737
CNS0095607Whole white alabastrum(tetraploid) 17.587
CNS0095608Whole white alabastrum(tetraploid) 25.128
CNS0095609Whole white alabastrum(tetraploid) 39.657
CNS0095610Silvery flower (tetraploid) 18.861
CNS0095611Silvery flower (tetraploid) 28.180
CNS0095612Silvery flower (tetraploid) 34.304
CNS0095613Golden flower (tetraploid) 14.832
CNS0095614Golden flower (tetraploid) 27.710
CNS0095615Golden flower (tetraploid) 34.405
CRA001975CRR073297Stem 17.557
CRR073298Stem 27.099
CRR073299Stem 34.632
CRR073300Leaf 17.065
CRR073301Leaf 25.865
CRR073302Leaf 34.956
CRR073303Juvenile bud 14.568
CRR073304Juvenile bud 21.697
CRR073305Juvenile bud 33.505
CRR073306Third green 10.811
CRR073307Third green 20.615
CRR073308Third green 30.954
CRR073309Second white 10.184
CRR073310Second white 20.415
CRR073311Second white 30.348
CRR073312Silver flowering 10.891
CRR073313Silver flowering 20.478
CRR073314Silver flowering 30.357
CRR073315Gold flowering 12.005
CRR073316Gold flowering 24.416
CRR073317Gold flowering 32.086
CRR073318Tawny withering 15.886
CRR073319Tawny withering 23.681
CRR073320Tawny withering 36.663