Gene detail

Detail information of GWHGAAZE019177

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008235142.1	1.9836E-162	PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic [Prunus mume]
Swissprot	tr\|Q9S834\|CLPP5_ARATH	5E-157	ATP-dependent Clp protease proteolytic subunit 5, chloroplastic (Precursor)
trEMBL	tr\|W9QCW7\|W9QCW7_9ROSA	1E-162	ATP-dependent Clp protease proteolytic subunit {ECO:0000256\|RuleBase:RU003567}
TAIR10	AT1G02560.1	1E-122	nuclear encoded CLP protease 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	33250281	33260315	+
GWHAAZE00000005	mRNA	33250281	33260315	+
GWHAAZE00000005	exon	33250281	33250396	+
GWHAAZE00000005	exon	33251745	33251859	+
GWHAAZE00000005	exon	33251966	33252058	+
GWHAAZE00000005	exon	33252652	33252697	+
GWHAAZE00000005	exon	33252812	33252884	+
GWHAAZE00000005	exon	33257136	33257170	+
GWHAAZE00000005	exon	33257281	33257369	+
GWHAAZE00000005	exon	33260010	33260315	+
GWHAAZE00000005	CDS	33250281	33250396	+
GWHAAZE00000005	CDS	33251745	33251859	+
GWHAAZE00000005	CDS	33251966	33252058	+
GWHAAZE00000005	CDS	33252652	33252697	+
GWHAAZE00000005	CDS	33252812	33252884	+
GWHAAZE00000005	CDS	33257136	33257170	+
GWHAAZE00000005	CDS	33257281	33257369	+
GWHAAZE00000005	CDS	33260010	33260315	+

Transcript Sequence
>GWHTAAZE019199 AAACTAAAATCTGTTGGTAGCAAAAAGTATTGCCGGAGTTCGCCGGTGAAGGCTGTGTATTCCGGTGGCGATTGGAGCTCGGAGAAGACTTCACGCAACGGGATTTGGTCAATTAGAGATGATTTGCAAGTTCCTTCATCTCCGTATTTTCCCGTAAATTCGCGAGGTCAAGGACCACCTCCGATGGTACAAGAGCGTTTCCAGAGTGTGATTAGTCAGCTCTTCCAACATAGGATTATACGTTGCGGAGGAGAAGTTGAAGATGAGATGGCGAACACTATTGTTGCACAGCTTCTCTATCTGGATGCTATTGATCCGAAAAAGGATATTGTCATGTATGTGAACTCTCCTGGTGGATCAGTTACAGCAGGGATGGCCATTTTTGATACCATGAGGCATATCCGACCTGATGTCTCCACTGTATGCGTTGGGCTAGCAGCAAGTATGGGGGCTTTTCTTCTTAGTGCTGGCACCAAAGGAAAAAGATACAGCTTGCCAAACTCGAGGATAATGATCCATCAGCCTATTGGTGGTGCTCAGGGATCCCAAACAGAGGTTGAAATTCAGGTAAATGAGATGTTGCATCACAAGGCAAATCTAAATGGATACCTTGCTTACCACACAGGTCAGAGCTTAGATAGGATTAATGAGGACACAGACCGCGATTACTTCATGAGCGCCAAAGAAGCCAAAGATTATGGCCTTATAGATGGCATTATCCTCAATCCCCTCAAAGCTCTTCGGCCATTAGCTATTGCCGAGAGCACCGAGAACGCCGCTATTGCCGAGAATGCCGAGAACACAGTTATTGCCGAGAGCGCCGAGAACACCGCCATTGCCGAGAACGCTGAGAATGCCGAGAACAGCAGTTAA

Network for GWHGAAZE019177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00574.24	CLP_protease	64	240	1.10E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01358	clpP, CLPP	Cell cycle - Caulobacter	map04112
K01358	clpP, CLPP	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004252	molecular_function	serine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	100.880
	SRR3591706	second leaf	161.129
	SRR3591707	mature leaf	182.637
	SRR3591708	Shoot apex	158.251
	SRR3591709	Stem	60.164
	SRR3591710	White floral bud	153.401
	SRR3591711	White flower	181.580
	SRR3591712	Green floral bud	144.797
	SRR3591713	Yellow flower	231.019
SRP173429	SRR8316895	Juvenile bud stage	79.896
	SRR8316896	Juvenile bud stage	102.265
	SRR8316897	Juvenile bud stage	53.557
	SRR8316894	Third green stage	48.677
	SRR8316900	Third green stage	175.331
	SRR8316901	Third green stage	157.833
	SRR8316898	Complete white stage	98.090
	SRR8316899	Complete white stage	200.155
	SRR8316903	Complete white stage	143.687
	SRR8316902	Silver flowering stage	78.393
	SRR8316904	Silver flowering stage	102.487
	SRR8316905	Silver flowering stage	49.915
	SRR8316906	Gold flowering stage	195.042
	SRR8316907	Gold flowering stage	193.904
	SRR8316908	Gold flowering stage	194.417
SRP132670	SRR6706286	Control	228.091
	SRR6706287	Light intensity 50%	225.476
	SRR6706288	Light intensity 20%	235.466
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	91.593
	CNS0095593	Slightly white alabastrum(diploid) 2	99.383
	CNS0095594	Slightly white alabastrum(diploid) 3	80.713
	CNS0095595	Whole white alabastrum(diploid) 2	90.664
	CNS0095596	Whole white alabastrum(diploid) 3	92.466
	CNS0095597	Whole white alabastrum(diploid) 4	85.806
	CNS0095598	Silvery flower (diploied) 1	114.627
	CNS0095599	Silvery flower (diploied) 2	133.127
	CNS0095600	Silvery flower (diploied) 3	260.565
	CNS0095601	Golden flower (diploid) 1	136.602
	CNS0095602	Golden flower (diploid) 2	228.610
	CNS0095603	Golden flower (diploid) 3	223.586
	CNS0095604	Slightly white alabastrum(tetraploid) 1	116.608
	CNS0095605	Slightly white alabastrum(tetraploid) 2	112.833
	CNS0095606	Slightly white alabastrum(tetraploid) 3	180.527
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.772
	CNS0095608	Whole white alabastrum(tetraploid) 2	68.220
	CNS0095609	Whole white alabastrum(tetraploid) 3	149.240
	CNS0095610	Silvery flower (tetraploid) 1	242.912
	CNS0095611	Silvery flower (tetraploid) 2	308.608
	CNS0095612	Silvery flower (tetraploid) 3	307.626
	CNS0095613	Golden flower (tetraploid) 1	278.527
	CNS0095614	Golden flower (tetraploid) 2	221.406
	CNS0095615	Golden flower (tetraploid) 3	357.449
CRA001975	CRR073297	Stem 1	180.339
	CRR073298	Stem 2	162.880
	CRR073299	Stem 3	196.032
	CRR073300	Leaf 1	198.908
	CRR073301	Leaf 2	201.456
	CRR073302	Leaf 3	211.202
	CRR073303	Juvenile bud 1	230.475
	CRR073304	Juvenile bud 2	249.025
	CRR073305	Juvenile bud 3	199.824
	CRR073306	Third green 1	198.371
	CRR073307	Third green 2	115.008
	CRR073308	Third green 3	147.188
	CRR073309	Second white 1	242.450
	CRR073310	Second white 2	218.391
	CRR073311	Second white 3	213.636
	CRR073312	Silver flowering 1	217.784
	CRR073313	Silver flowering 2	217.694
	CRR073314	Silver flowering 3	202.844
	CRR073315	Gold flowering 1	573.918
	CRR073316	Gold flowering 2	693.037
	CRR073317	Gold flowering 3	514.164
	CRR073318	Tawny withering 1	91.334
	CRR073319	Tawny withering 2	97.054
	CRR073320	Tawny withering 3	114.744