Gene detail

Detail information of GWHGAAZE019178

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN77695.1	2.4684E-109	hypothetical protein VITISV_015614 [Vitis vinifera]
Swissprot	tr\|Q9FP29\|KNOS1_ORYSJ	6E-80	Homeobox protein knotted-1-like 1
trEMBL	tr\|A5C7Q8\|A5C7Q8_VITVI	9E-110	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN77695.1}
TAIR10	AT1G23380.1	1E-48	KNOTTED1-like homeobox gene 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	33330269	33338992	+
GWHAAZE00000005	mRNA	33330269	33338992	+
GWHAAZE00000005	exon	33330269	33330361	+
GWHAAZE00000005	exon	33330775	33330940	+
GWHAAZE00000005	exon	33337958	33338208	+
GWHAAZE00000005	exon	33338777	33338992	+
GWHAAZE00000005	CDS	33330269	33330361	+
GWHAAZE00000005	CDS	33330775	33330940	+
GWHAAZE00000005	CDS	33337958	33338208	+
GWHAAZE00000005	CDS	33338777	33338992	+

Transcript Sequence
>GWHTAAZE019200 ATGTCTTCGCTGCTTGAAGAAATCAGCAAAGAGATTCATCCAATCGGAACTCGCAGTGAGATCGGAGCTGATCCTGAACTTGATGAATTCATGGAATCCTACTGTGAGATTCTGCATAGATACAAGGAAGAGGTATCGAAGACGTTTGATGAAGCGACGGCGTTTTTGACCGGCGTCGAGTCACAGCTCAATAACCTCTGCAAGGAAACGATGAGGTCATCGACGGCGTCGTTGATCTCCTCCGGGAATTATCACTCCGATGAAGTAGCTGGTACATCGGAAGAGGATGTAAGTTGCGGAGAGATGGAACATGGTCAAAGTCAAGAATCTCCGGGCGCTTGTACTGGTGACCAGGAGCTAAAGGAAATGCTATTGCGAAAGTACAGCGGATACCTTGGTAGTTTGAAAAAGGACTTGTTAAAGAAAAGAAAGAAAGGTAAATTGCCAAAGGATGCAAGGAATGCATTGCTGGACTGGTGGAACACCCACTACCGATGGCCTTATCCTACGGAAGAGGATAAGGCGAAGCTGGCGGAAGTAACGGGACTAGACCAGAAGCAGATAAACAACTGGTTTATAAATCAGAGAAAGAGGCATTGGAGACCTTCAGAGGACATGAGATATGCTCTCATGGAAGGTGTTGGTGGTGGCAGCAGCAGCAGCTTTCAAGGGCCTGTTTATTTTGATGCTGCTGCTGGAACAGGTAGTAATACTGTTGATATTTAA

Network for GWHGAAZE019178

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03791.14	KNOX2	21	67	1.30E-22
PF03789.14	ELK	119	140	1.40E-08
PF05920.12	Homeobox_KN	159	198	1.30E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.716
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	5.231
	SRR3591709	Stem	39.834
	SRR3591710	White floral bud	44.755
	SRR3591711	White flower	50.959
	SRR3591712	Green floral bud	20.839
	SRR3591713	Yellow flower	26.990
SRP173429	SRR8316895	Juvenile bud stage	8.534
	SRR8316896	Juvenile bud stage	4.072
	SRR8316897	Juvenile bud stage	2.487
	SRR8316894	Third green stage	6.008
	SRR8316900	Third green stage	8.245
	SRR8316901	Third green stage	14.506
	SRR8316898	Complete white stage	20.371
	SRR8316899	Complete white stage	46.871
	SRR8316903	Complete white stage	28.601
	SRR8316902	Silver flowering stage	8.042
	SRR8316904	Silver flowering stage	9.046
	SRR8316905	Silver flowering stage	4.109
	SRR8316906	Gold flowering stage	8.924
	SRR8316907	Gold flowering stage	12.460
	SRR8316908	Gold flowering stage	11.930
SRP132670	SRR6706286	Control	18.501
	SRR6706287	Light intensity 50%	17.520
	SRR6706288	Light intensity 20%	16.514
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.922
	CNS0095593	Slightly white alabastrum(diploid) 2	22.932
	CNS0095594	Slightly white alabastrum(diploid) 3	6.723
	CNS0095595	Whole white alabastrum(diploid) 2	17.619
	CNS0095596	Whole white alabastrum(diploid) 3	4.051
	CNS0095597	Whole white alabastrum(diploid) 4	15.466
	CNS0095598	Silvery flower (diploied) 1	36.335
	CNS0095599	Silvery flower (diploied) 2	33.246
	CNS0095600	Silvery flower (diploied) 3	20.092
	CNS0095601	Golden flower (diploid) 1	32.111
	CNS0095602	Golden flower (diploid) 2	19.869
	CNS0095603	Golden flower (diploid) 3	21.167
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.971
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.338
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.732
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.617
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.206
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.125
	CNS0095610	Silvery flower (tetraploid) 1	16.756
	CNS0095611	Silvery flower (tetraploid) 2	17.841
	CNS0095612	Silvery flower (tetraploid) 3	10.892
	CNS0095613	Golden flower (tetraploid) 1	14.696
	CNS0095614	Golden flower (tetraploid) 2	13.432
	CNS0095615	Golden flower (tetraploid) 3	8.266
CRA001975	CRR073297	Stem 1	16.238
	CRR073298	Stem 2	18.716
	CRR073299	Stem 3	6.962
	CRR073300	Leaf 1	45.280
	CRR073301	Leaf 2	59.793
	CRR073302	Leaf 3	42.589
	CRR073303	Juvenile bud 1	46.998
	CRR073304	Juvenile bud 2	38.769
	CRR073305	Juvenile bud 3	67.309
	CRR073306	Third green 1	13.748
	CRR073307	Third green 2	27.231
	CRR073308	Third green 3	20.186
	CRR073309	Second white 1	4.335
	CRR073310	Second white 2	0.383
	CRR073311	Second white 3	2.193
	CRR073312	Silver flowering 1	0.559
	CRR073313	Silver flowering 2	0.101
	CRR073314	Silver flowering 3	2.915
	CRR073315	Gold flowering 1	1.735
	CRR073316	Gold flowering 2	1.706
	CRR073317	Gold flowering 3	1.030
	CRR073318	Tawny withering 1	47.423
	CRR073319	Tawny withering 2	57.387
	CRR073320	Tawny withering 3	43.739