Detail information of GWHGAAZE019194


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009797340.12.33396E-56PREDICTED: F-box protein At3g07870-like isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9SFC7|FB135_ARATH1E-17F-box protein At3g07870
trEMBLtr|A0A059B7J8|A0A059B7J8_EUCGR3E-43Uncharacterized protein {ECO:0000313|EMBL:KCW62103.1}
TAIR10AT3G07870.11E-16F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3360823233609494-
GWHAAZE00000005mRNA3360823233609494-
GWHAAZE00000005exon3360823233609494-
GWHAAZE00000005CDS3360823233609494-
Transcript Sequence

Network for GWHGAAZE019194

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box31672.90E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.166
SRR3591711White flower0.205
SRR3591712Green floral bud0.594
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.069
SRR8316896Juvenile bud stage 0.137
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.054
SRR8316900Third green stage 0.165
SRR8316901Third green stage 0.084
SRR8316898Complete white stage 0.173
SRR8316899Complete white stage 0.074
SRR8316903Complete white stage 0.378
SRR8316902Silver flowering stage0.265
SRR8316904Silver flowering stage0.296
SRR8316905Silver flowering stage0.073
SRR8316906Gold flowering stage 0.289
SRR8316907Gold flowering stage 0.426
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.082
SRR6706287Light intensity 50%0.112
SRR6706288Light intensity 20%0.116
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.249
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.085
CNS0095597Whole white alabastrum(diploid) 40.046
CNS0095598Silvery flower (diploied) 10.303
CNS0095599Silvery flower (diploied) 20.248
CNS0095600Silvery flower (diploied) 30.758
CNS0095601Golden flower (diploid) 10.231
CNS0095602Golden flower (diploid) 20.228
CNS0095603Golden flower (diploid) 30.273
CNS0095604Slightly white alabastrum(tetraploid) 10.075
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.061
CNS0095612Silvery flower (tetraploid) 30.002
CNS0095613Golden flower (tetraploid) 10.203
CNS0095614Golden flower (tetraploid) 20.128
CNS0095615Golden flower (tetraploid) 30.084
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.063
CRR073299Stem 30.093
CRR073300Leaf 10.037
CRR073301Leaf 20.088
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.098
CRR073304Juvenile bud 20.144
CRR073305Juvenile bud 30.306
CRR073306Third green 10.000
CRR073307Third green 20.133
CRR073308Third green 30.122
CRR073309Second white 10.602
CRR073310Second white 20.345
CRR073311Second white 30.293
CRR073312Silver flowering 10.242
CRR073313Silver flowering 20.417
CRR073314Silver flowering 30.270
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.001
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.380