Detail information of GWHGAAZE019196


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009797340.12.91585E-59PREDICTED: F-box protein At3g07870-like isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9SVX4|FB205_ARATH5E-12F-box protein At3g57590
trEMBLtr|A0A059B7U6|A0A059B7U6_EUCGR2E-42Uncharacterized protein {ECO:0000313|EMBL:KCW62104.1}
TAIR10AT3G57590.12E-11F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3363066033631919-
GWHAAZE00000005mRNA3363066033631919-
GWHAAZE00000005exon3363066033631919-
GWHAAZE00000005CDS3363066033631919-
Transcript Sequence

Network for GWHGAAZE019196

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box32683.60E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.696
SRR3591706second leaf0.469
SRR3591707mature leaf0.125
SRR3591708Shoot apex1.442
SRR3591709Stem1.293
SRR3591710White floral bud0.746
SRR3591711White flower1.075
SRR3591712Green floral bud0.428
SRR3591713Yellow flower0.883
SRP173429 SRR8316895Juvenile bud stage 0.832
SRR8316896Juvenile bud stage 1.045
SRR8316897Juvenile bud stage 0.345
SRR8316894Third green stage 0.734
SRR8316900Third green stage 1.695
SRR8316901Third green stage 1.459
SRR8316898Complete white stage 0.377
SRR8316899Complete white stage 2.276
SRR8316903Complete white stage 0.529
SRR8316902Silver flowering stage0.188
SRR8316904Silver flowering stage0.648
SRR8316905Silver flowering stage0.335
SRR8316906Gold flowering stage 1.221
SRR8316907Gold flowering stage 0.961
SRR8316908Gold flowering stage 1.005
SRP132670SRR6706286Control1.036
SRR6706287Light intensity 50%0.882
SRR6706288Light intensity 20%1.056
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.506
CNS0095593Slightly white alabastrum(diploid) 21.389
CNS0095594Slightly white alabastrum(diploid) 31.022
CNS0095595Whole white alabastrum(diploid) 21.111
CNS0095596Whole white alabastrum(diploid) 31.724
CNS0095597Whole white alabastrum(diploid) 41.851
CNS0095598Silvery flower (diploied) 11.394
CNS0095599Silvery flower (diploied) 21.265
CNS0095600Silvery flower (diploied) 31.673
CNS0095601Golden flower (diploid) 10.952
CNS0095602Golden flower (diploid) 21.167
CNS0095603Golden flower (diploid) 31.197
CNS0095604Slightly white alabastrum(tetraploid) 10.337
CNS0095605Slightly white alabastrum(tetraploid) 20.071
CNS0095606Slightly white alabastrum(tetraploid) 30.969
CNS0095607Whole white alabastrum(tetraploid) 10.376
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.188
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.098
CNS0095612Silvery flower (tetraploid) 30.269
CNS0095613Golden flower (tetraploid) 10.052
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.553
CRR073298Stem 21.152
CRR073299Stem 31.101
CRR073300Leaf 10.990
CRR073301Leaf 20.659
CRR073302Leaf 32.117
CRR073303Juvenile bud 10.209
CRR073304Juvenile bud 20.237
CRR073305Juvenile bud 30.522
CRR073306Third green 10.162
CRR073307Third green 20.000
CRR073308Third green 30.060
CRR073309Second white 10.240
CRR073310Second white 20.123
CRR073311Second white 30.000
CRR073312Silver flowering 10.186
CRR073313Silver flowering 20.043
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.251
CRR073316Gold flowering 20.220
CRR073317Gold flowering 30.353
CRR073318Tawny withering 11.053
CRR073319Tawny withering 20.974
CRR073320Tawny withering 31.259