Gene detail

Detail information of GWHGAAZE019197

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010686464.1	8.96407E-47	PREDICTED: uncharacterized protein LOC104900671 [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q9C800\|FB34_ARATH	4E-13	Putative F-box protein At1g33530
trEMBL	tr\|A0A059B7J8\|A0A059B7J8_EUCGR	2E-43	Uncharacterized protein {ECO:0000313\|EMBL:KCW62103.1}
TAIR10	AT1G33530.1	2E-12	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	33648120	33657299	-
GWHAAZE00000005	mRNA	33648120	33657299	-
GWHAAZE00000005	exon	33656785	33657299	-
GWHAAZE00000005	exon	33652365	33653546	-
GWHAAZE00000005	exon	33648120	33648213	-
GWHAAZE00000005	CDS	33656785	33657299	-
GWHAAZE00000005	CDS	33652365	33653546	-
GWHAAZE00000005	CDS	33648120	33648213	-

Transcript Sequence
>GWHTAAZE019219 ATGGTCAACAGTAACAAAGTCAATTCCTCTAATCGTACTTGCGGGGACGAAATAATGGTTTTTGGCACGGAGACTGAAGATATCCGTTTTCTGCCTCATCTGGGACCTAAACGTTGTTATTATCGTGAAGAGGAGCATGAAAATATGTATCTCTTGGGGACGAGAGAGCATTTGTGTCTATGTCATGTGTTGCGGGGTCCACTGATCTATGTTTGGGTGCTTGAGGACTATTCCAACTGGGTTTGGGATAGGAGATACAAGGTCAACCTCAATTGGGATGTGAATCGTTTCCCTTTCAACTCTGTTAACGGTTACATTCCCAGATACAATCCCAAGTTTCTAAAGGTATTAGGCATTCACAACGGTGAACTGGTGATAGCATGGGATTTAAGAGGCATATTTTCATATAATCTTGAGCATAATACTGTTAGCAAAATCGAGATTACGGTGGAAGGATCTTCTATGCTTCCTCTTCCATTTGCGTCTGCTTACACCAAAAGCTTTGTTAGCTTGAGTTCATTTATTATTTTGTTTAAGAAGGGTCCTGTTACACCTCTTCCCGATGATATCACCGTGGAGATTCTTAGTAGACTCCAGTTTAATTCTGTTGTAGAATGCCAAAGGGTGTGTAAAAAGTGGCGGGCATTAACGTCATCGCCTTCTTTTACAGAATTGCATCTGAAAAGATCTACAACTACTCCTTCACTTTTTCTGCACCGGGTTATGTATGGTCCGCATAATCAATTAACTTTCTTTATTTATGATAAAGCTGGTCAAAAGGCTCATGAGAAGAAGAATGTCATCACCGAAGTACAACAAAGATCGGGGCCCATATTGTACCACTATGACCCCATGGTATTAGGCTCGTGCAATGGGTTACTAATGTTCCTAGCAACTCGAAGTGTATCTTTGATTTTTGTTTTAAATCCTATTACACAAGAACTAATAACTCTGCCGGCTCCATGTGGTCTGTGTACTCCATGTGGAATCTATTTCCACCCTTCAACTCGCGAGTTTAAGCTGCTATTTTCTGTGTACAAGGACGAGAGTTGCCTTAACTTTTATTACACATATAGCCTTAAGTCTAAGATCTGTAAACAACTCAAATATTCCTCCTCTTGTAAGACTAGGCGCAGCCCTCCTCCAATTCTGGTAAACGGATCTCTGCATTGGATGGTCAACAGGAACAAAATCAAGAACAGAAACGACACCTCTAATCGCAGTTGCACAGATGCAATCATGGTGTTTGACACTGAGACTGAAGATTTCCAGGTTTTGCCTCATCCGGGACCTAGAAGTTGTTATTATTGGGAAGAGGAGCATGCACATATGTATCTCTTGGGGATGAGAGAGCATTTGTGCCTATGTCATGTGTCACGGGATCAAGTGATTTATGTTTGGGTGCTCGAGGACTATGCTAACTGGGTTTGGGATAGAAGATATAAGGTCAACCTTGATTGGGATGTGAACCATTTCCCTTTCGAATGTATGAATTACATTCCCAACTACAATCCCATGTTTGTAACGGTATTAGGCATTCATGACGGTGAATTGGTGATAGCATGGGATTTAAGAGGCGTATATGCGTATAATCTCGAGCAGAATACTGTTAGCAAAATCGAGTTTAAGGTGGAAAGATCTTCTATGCTGCTTCTTCAGTATGCGTCTGTTTACACCAAAAGCCTCGTTAGCTTGAGACAAGATGGTTCTCGAGTGCTTGCCATGGCTGCCACATATTTGGGGTCAACTGGTCAGTCCATGTATTATATTTTGTCAGAAGAGCCCGGTTAG

Network for GWHGAAZE019197

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	186	223	6.00E-08
PF07734.14	FBA_1	384	500	3.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.143
	SRR3591706	second leaf	0.362
	SRR3591707	mature leaf	0.039
	SRR3591708	Shoot apex	1.450
	SRR3591709	Stem	0.681
	SRR3591710	White floral bud	0.750
	SRR3591711	White flower	0.869
	SRR3591712	Green floral bud	0.759
	SRR3591713	Yellow flower	0.500
SRP173429	SRR8316895	Juvenile bud stage	1.241
	SRR8316896	Juvenile bud stage	1.949
	SRR8316897	Juvenile bud stage	0.729
	SRR8316894	Third green stage	0.621
	SRR8316900	Third green stage	1.525
	SRR8316901	Third green stage	1.547
	SRR8316898	Complete white stage	0.329
	SRR8316899	Complete white stage	1.691
	SRR8316903	Complete white stage	0.495
	SRR8316902	Silver flowering stage	1.032
	SRR8316904	Silver flowering stage	1.122
	SRR8316905	Silver flowering stage	0.743
	SRR8316906	Gold flowering stage	2.340
	SRR8316907	Gold flowering stage	2.908
	SRR8316908	Gold flowering stage	2.164
SRP132670	SRR6706286	Control	0.328
	SRR6706287	Light intensity 50%	0.460
	SRR6706288	Light intensity 20%	0.633
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.255
	CNS0095593	Slightly white alabastrum(diploid) 2	2.588
	CNS0095594	Slightly white alabastrum(diploid) 3	2.574
	CNS0095595	Whole white alabastrum(diploid) 2	1.829
	CNS0095596	Whole white alabastrum(diploid) 3	2.982
	CNS0095597	Whole white alabastrum(diploid) 4	0.848
	CNS0095598	Silvery flower (diploied) 1	0.970
	CNS0095599	Silvery flower (diploied) 2	1.037
	CNS0095600	Silvery flower (diploied) 3	1.659
	CNS0095601	Golden flower (diploid) 1	3.441
	CNS0095602	Golden flower (diploid) 2	1.746
	CNS0095603	Golden flower (diploid) 3	1.559
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.934
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.132
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.855
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.233
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.662
	CNS0095610	Silvery flower (tetraploid) 1	0.927
	CNS0095611	Silvery flower (tetraploid) 2	0.602
	CNS0095612	Silvery flower (tetraploid) 3	0.912
	CNS0095613	Golden flower (tetraploid) 1	0.879
	CNS0095614	Golden flower (tetraploid) 2	0.707
	CNS0095615	Golden flower (tetraploid) 3	0.461
CRA001975	CRR073297	Stem 1	0.616
	CRR073298	Stem 2	1.627
	CRR073299	Stem 3	0.747
	CRR073300	Leaf 1	0.882
	CRR073301	Leaf 2	0.462
	CRR073302	Leaf 3	0.781
	CRR073303	Juvenile bud 1	0.679
	CRR073304	Juvenile bud 2	0.832
	CRR073305	Juvenile bud 3	0.823
	CRR073306	Third green 1	0.318
	CRR073307	Third green 2	0.541
	CRR073308	Third green 3	0.123
	CRR073309	Second white 1	1.119
	CRR073310	Second white 2	1.271
	CRR073311	Second white 3	1.502
	CRR073312	Silver flowering 1	1.295
	CRR073313	Silver flowering 2	0.859
	CRR073314	Silver flowering 3	0.935
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.433
	CRR073317	Gold flowering 3	0.367
	CRR073318	Tawny withering 1	0.827
	CRR073319	Tawny withering 2	0.456
	CRR073320	Tawny withering 3	0.699