Detail information of GWHGAAZE019198


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002510562.11.58667E-14conserved hypothetical protein [Ricinus communis]
Swissprottr|Q5BPS3|DOR_ARATH0.000001F-box protein DOR
trEMBLtr|B9R8B9|B9R8B9_RICCO6E-15Putative uncharacterized protein {ECO:0000313|EMBL:EEF52749.1}
TAIR10AT1G33020.10.0000002F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3365759633660667-
GWHAAZE00000005mRNA3365759633660667-
GWHAAZE00000005exon3365759633658023-
GWHAAZE00000005exon3366055633660667-
GWHAAZE00000005five_prime_UTR3366055633660667-
GWHAAZE00000005five_prime_UTR3365801933658023-
GWHAAZE00000005CDS3365759633658018-
Transcript Sequence

Network for GWHGAAZE019198

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box32681.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.105
SRR3591706second leaf0.178
SRR3591707mature leaf0.221
SRR3591708Shoot apex1.553
SRR3591709Stem0.803
SRR3591710White floral bud0.538
SRR3591711White flower0.607
SRR3591712Green floral bud0.396
SRR3591713Yellow flower0.047
SRP173429 SRR8316895Juvenile bud stage 1.623
SRR8316896Juvenile bud stage 1.846
SRR8316897Juvenile bud stage 0.425
SRR8316894Third green stage 1.045
SRR8316900Third green stage 2.544
SRR8316901Third green stage 1.923
SRR8316898Complete white stage 0.429
SRR8316899Complete white stage 1.107
SRR8316903Complete white stage 0.519
SRR8316902Silver flowering stage0.641
SRR8316904Silver flowering stage1.160
SRR8316905Silver flowering stage0.494
SRR8316906Gold flowering stage 3.874
SRR8316907Gold flowering stage 2.716
SRR8316908Gold flowering stage 3.068
SRP132670SRR6706286Control2.461
SRR6706287Light intensity 50%1.968
SRR6706288Light intensity 20%2.472
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.058
CNS0095593Slightly white alabastrum(diploid) 21.128
CNS0095594Slightly white alabastrum(diploid) 31.705
CNS0095595Whole white alabastrum(diploid) 21.198
CNS0095596Whole white alabastrum(diploid) 30.669
CNS0095597Whole white alabastrum(diploid) 40.463
CNS0095598Silvery flower (diploied) 11.719
CNS0095599Silvery flower (diploied) 20.466
CNS0095600Silvery flower (diploied) 32.378
CNS0095601Golden flower (diploid) 10.723
CNS0095602Golden flower (diploid) 21.539
CNS0095603Golden flower (diploid) 31.603
CNS0095604Slightly white alabastrum(tetraploid) 12.689
CNS0095605Slightly white alabastrum(tetraploid) 21.088
CNS0095606Slightly white alabastrum(tetraploid) 32.069
CNS0095607Whole white alabastrum(tetraploid) 10.819
CNS0095608Whole white alabastrum(tetraploid) 20.152
CNS0095609Whole white alabastrum(tetraploid) 31.719
CNS0095610Silvery flower (tetraploid) 10.794
CNS0095611Silvery flower (tetraploid) 20.596
CNS0095612Silvery flower (tetraploid) 31.178
CNS0095613Golden flower (tetraploid) 10.208
CNS0095614Golden flower (tetraploid) 20.584
CNS0095615Golden flower (tetraploid) 30.156
CRA001975CRR073297Stem 11.707
CRR073298Stem 20.761
CRR073299Stem 31.438
CRR073300Leaf 10.724
CRR073301Leaf 21.153
CRR073302Leaf 30.187
CRR073303Juvenile bud 11.194
CRR073304Juvenile bud 20.703
CRR073305Juvenile bud 31.459
CRR073306Third green 10.521
CRR073307Third green 20.192
CRR073308Third green 30.733
CRR073309Second white 12.155
CRR073310Second white 21.310
CRR073311Second white 32.691
CRR073312Silver flowering 11.187
CRR073313Silver flowering 21.502
CRR073314Silver flowering 30.165
CRR073315Gold flowering 10.365
CRR073316Gold flowering 20.406
CRR073317Gold flowering 31.338
CRR073318Tawny withering 11.352
CRR073319Tawny withering 20.476
CRR073320Tawny withering 31.247