Gene detail

Detail information of GWHGAAZE019207

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP23586.1	5.23761E-28	hypothetical protein JCGZ_23419 [Jatropha curcas]
Swissprot	tr\|Q9ZUN0\|FB113_ARATH	0.00000002	Putative F-box protein At2g19630
trEMBL	tr\|A0A067JI10\|A0A067JI10_JATCU	2E-28	Uncharacterized protein {ECO:0000313\|EMBL:KDP23586.1}
TAIR10	AT2G19630.2	0.000000003	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	33859383	33860627	+
GWHAAZE00000005	mRNA	33859383	33860627	+
GWHAAZE00000005	exon	33859383	33859828	+
GWHAAZE00000005	exon	33860054	33860627	+
GWHAAZE00000005	CDS	33859383	33859828	+
GWHAAZE00000005	CDS	33860054	33860627	+

Transcript Sequence
>GWHTAAZE019229 ATGGTCTTCGAGTGCTTGACATGGATTCCTTTTATTTGGGGTCACCTGGCCGGTCCGTTTGCTAAGAAGAGACCAATTCGACCTCTTCCTGATGATCTCACCATCGAGATTCTTAGTAGACTCCCAATAAAATGCATTTTAGAATGTCGGGGTGTGTGTAGGAAGTGGCGATCATTAACGTCATCACCTTATTTTGCAGAATTGTGTCTCCAAAGAGATATTGCTCCTCCATCCCTTTTTTTTCACTGGTGTGACTATTGTTGCTACGATAAGGCGGAGGATTCGAGCTTCTGGGTTTATGATAAAGCTGGTCATAGTGAGACTATTAATAGGTGGAAGAGGAGGATCATCACAAAAGTACGCTCTGGCTTGGGGCGTGAGTTGTACTTCTTTAAAGCCATTGTTTTAGGTTCATGCGATGGGTTACTAATGTTCCGAGCAACCAGAACTAGGAGTAAATCTGCTGCGATTATGTTGAACGGATCTCTACATTGGATGGTCTACTGCAACAAAATAAAAGACAACAAAGGCCCCTTTAATCATACTTGCCCAGATGGAATCATGTTGTTTGGCACGAAAACTGAAGTTTTCCAAGTTCTGCCTCTACCGGGAGCTATTTGCTGTAATAACCCAATGGAGCATGGAAACATGCATCTGTTGGGGACGAGAGATCATTTGTGTATATGTCATGTGTCGTGGGGCGAAGTGATTCATGTGTGGGTGCTTAAGGACTACGTTAGGTGGGCTTGGGATAGGAGATATAAGATCAACCTCAATTGGGATCTCAAGCGCTTCCCTTTCGAAGGTAATTCCGGTTACACCGTTCCTTACCATCCCAGGTATGTAAGGCCATTAGGCATACACATCGAGGAACCGGTGATATCATGGGATTACAGAGGAGTATTTACGTGTAATCTCAAGCAGAATATAGTTAGCAAAATACCCATCAAGGCAAAAATAAGTTCGACTTTCGTTCCATATGCATCTGCCTACACTAGAAGCCTCATCACTTGGAGATGA

Network for GWHGAAZE019207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	29	64	1.50E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.796
	SRR3591706	second leaf	12.502
	SRR3591707	mature leaf	11.170
	SRR3591708	Shoot apex	26.575
	SRR3591709	Stem	33.366
	SRR3591710	White floral bud	9.304
	SRR3591711	White flower	9.597
	SRR3591712	Green floral bud	15.076
	SRR3591713	Yellow flower	8.787
SRP173429	SRR8316895	Juvenile bud stage	8.942
	SRR8316896	Juvenile bud stage	12.699
	SRR8316897	Juvenile bud stage	2.551
	SRR8316894	Third green stage	5.142
	SRR8316900	Third green stage	13.261
	SRR8316901	Third green stage	13.457
	SRR8316898	Complete white stage	4.353
	SRR8316899	Complete white stage	17.542
	SRR8316903	Complete white stage	6.753
	SRR8316902	Silver flowering stage	4.370
	SRR8316904	Silver flowering stage	6.126
	SRR8316905	Silver flowering stage	2.658
	SRR8316906	Gold flowering stage	7.717
	SRR8316907	Gold flowering stage	8.973
	SRR8316908	Gold flowering stage	6.538
SRP132670	SRR6706286	Control	2.915
	SRR6706287	Light intensity 50%	4.318
	SRR6706288	Light intensity 20%	3.986
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.416
	CNS0095593	Slightly white alabastrum(diploid) 2	13.699
	CNS0095594	Slightly white alabastrum(diploid) 3	11.032
	CNS0095595	Whole white alabastrum(diploid) 2	9.486
	CNS0095596	Whole white alabastrum(diploid) 3	9.949
	CNS0095597	Whole white alabastrum(diploid) 4	6.993
	CNS0095598	Silvery flower (diploied) 1	9.477
	CNS0095599	Silvery flower (diploied) 2	7.764
	CNS0095600	Silvery flower (diploied) 3	10.023
	CNS0095601	Golden flower (diploid) 1	9.832
	CNS0095602	Golden flower (diploid) 2	11.408
	CNS0095603	Golden flower (diploid) 3	9.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.976
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.922
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.490
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.697
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.866
	CNS0095610	Silvery flower (tetraploid) 1	10.564
	CNS0095611	Silvery flower (tetraploid) 2	9.771
	CNS0095612	Silvery flower (tetraploid) 3	11.724
	CNS0095613	Golden flower (tetraploid) 1	9.270
	CNS0095614	Golden flower (tetraploid) 2	13.104
	CNS0095615	Golden flower (tetraploid) 3	10.820
CRA001975	CRR073297	Stem 1	7.715
	CRR073298	Stem 2	6.042
	CRR073299	Stem 3	2.884
	CRR073300	Leaf 1	7.030
	CRR073301	Leaf 2	9.235
	CRR073302	Leaf 3	3.823
	CRR073303	Juvenile bud 1	4.399
	CRR073304	Juvenile bud 2	2.705
	CRR073305	Juvenile bud 3	5.063
	CRR073306	Third green 1	1.167
	CRR073307	Third green 2	0.964
	CRR073308	Third green 3	0.916
	CRR073309	Second white 1	4.282
	CRR073310	Second white 2	3.675
	CRR073311	Second white 3	4.861
	CRR073312	Silver flowering 1	3.070
	CRR073313	Silver flowering 2	2.443
	CRR073314	Silver flowering 3	2.549
	CRR073315	Gold flowering 1	1.081
	CRR073316	Gold flowering 2	2.016
	CRR073317	Gold flowering 3	0.560
	CRR073318	Tawny withering 1	4.510
	CRR073319	Tawny withering 2	4.093
	CRR073320	Tawny withering 3	3.238