Detail information of GWHGAAZE019209


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010686464.11.06527E-49PREDICTED: uncharacterized protein LOC104900671 [Beta vulgaris subsp. vulgaris]
Swissprottr|Q9SFC7|FB135_ARATH1E-13F-box protein At3g07870
trEMBLtr|A0A059B7U6|A0A059B7U6_EUCGR3E-39Uncharacterized protein {ECO:0000313|EMBL:KCW62104.1}
TAIR10AT3G07870.17E-13F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3387984133881061+
GWHAAZE00000005mRNA3387984133881061+
GWHAAZE00000005exon3387984133881061+
GWHAAZE00000005CDS3387984133881061+
Transcript Sequence

Network for GWHGAAZE019209

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box28681.30E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.059
SRR3591706second leaf0.356
SRR3591707mature leaf0.570
SRR3591708Shoot apex0.433
SRR3591709Stem1.128
SRR3591710White floral bud1.510
SRR3591711White flower1.888
SRR3591712Green floral bud2.710
SRR3591713Yellow flower0.976
SRP173429 SRR8316895Juvenile bud stage 2.068
SRR8316896Juvenile bud stage 3.791
SRR8316897Juvenile bud stage 1.284
SRR8316894Third green stage 1.988
SRR8316900Third green stage 3.970
SRR8316901Third green stage 4.136
SRR8316898Complete white stage 1.800
SRR8316899Complete white stage 4.456
SRR8316903Complete white stage 2.811
SRR8316902Silver flowering stage1.492
SRR8316904Silver flowering stage1.926
SRR8316905Silver flowering stage0.875
SRR8316906Gold flowering stage 4.368
SRR8316907Gold flowering stage 2.654
SRR8316908Gold flowering stage 4.629
SRP132670SRR6706286Control1.515
SRR6706287Light intensity 50%1.563
SRR6706288Light intensity 20%2.131
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.361
CNS0095593Slightly white alabastrum(diploid) 22.382
CNS0095594Slightly white alabastrum(diploid) 35.154
CNS0095595Whole white alabastrum(diploid) 23.763
CNS0095596Whole white alabastrum(diploid) 34.796
CNS0095597Whole white alabastrum(diploid) 46.638
CNS0095598Silvery flower (diploied) 12.402
CNS0095599Silvery flower (diploied) 22.032
CNS0095600Silvery flower (diploied) 34.212
CNS0095601Golden flower (diploid) 13.189
CNS0095602Golden flower (diploid) 24.545
CNS0095603Golden flower (diploid) 33.614
CNS0095604Slightly white alabastrum(tetraploid) 16.816
CNS0095605Slightly white alabastrum(tetraploid) 26.529
CNS0095606Slightly white alabastrum(tetraploid) 35.789
CNS0095607Whole white alabastrum(tetraploid) 16.588
CNS0095608Whole white alabastrum(tetraploid) 27.191
CNS0095609Whole white alabastrum(tetraploid) 37.657
CNS0095610Silvery flower (tetraploid) 19.979
CNS0095611Silvery flower (tetraploid) 212.068
CNS0095612Silvery flower (tetraploid) 312.373
CNS0095613Golden flower (tetraploid) 18.024
CNS0095614Golden flower (tetraploid) 29.468
CNS0095615Golden flower (tetraploid) 312.702
CRA001975CRR073297Stem 12.082
CRR073298Stem 21.811
CRR073299Stem 33.357
CRR073300Leaf 12.665
CRR073301Leaf 21.392
CRR073302Leaf 33.000
CRR073303Juvenile bud 12.802
CRR073304Juvenile bud 23.351
CRR073305Juvenile bud 31.540
CRR073306Third green 12.010
CRR073307Third green 23.345
CRR073308Third green 31.904
CRR073309Second white 14.375
CRR073310Second white 21.574
CRR073311Second white 34.129
CRR073312Silver flowering 13.451
CRR073313Silver flowering 23.692
CRR073314Silver flowering 33.868
CRR073315Gold flowering 11.006
CRR073316Gold flowering 20.819
CRR073317Gold flowering 30.610
CRR073318Tawny withering 10.950
CRR073319Tawny withering 20.435
CRR073320Tawny withering 31.170